Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3475 and rihA are separated by 294 nucleotides rihA and Shewana3_3477 are separated by 18 nucleotides
Shewana3_3475: Shewana3_3475 - hypothetical protein (RefSeq), at 4,168,591 to 4,169,865
_3475
Shewana3_3476: rihA - ribonucleoside hydrolase 1 (RefSeq), at 4,170,160 to 4,171,116
rihA
Shewana3_3477: Shewana3_3477 - ribokinase (RefSeq), at 4,171,135 to 4,172,046
_3477
Position (kb) 4170
4171
4172 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4169.270 kb on - strand, within Shewana3_3475 at 4169.270 kb on - strand, within Shewana3_3475 at 4169.430 kb on + strand, within Shewana3_3475 at 4169.675 kb on + strand, within Shewana3_3475 at 4169.844 kb on + strand at 4169.884 kb on + strand at 4169.950 kb on + strand at 4169.958 kb on + strand at 4170.021 kb on - strand at 4170.092 kb on - strand at 4170.150 kb on - strand at 4170.158 kb on - strand at 4170.314 kb on + strand, within rihA at 4170.314 kb on + strand, within rihA at 4170.320 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.361 kb on + strand, within rihA at 4170.367 kb on + strand, within rihA at 4170.375 kb on - strand, within rihA at 4170.405 kb on + strand, within rihA at 4170.405 kb on + strand, within rihA at 4170.526 kb on - strand, within rihA at 4170.532 kb on + strand, within rihA at 4170.668 kb on + strand, within rihA at 4170.676 kb on - strand, within rihA at 4170.722 kb on + strand, within rihA at 4170.911 kb on - strand, within rihA at 4171.040 kb on + strand at 4171.074 kb on + strand at 4171.076 kb on + strand at 4171.213 kb on + strand at 4171.391 kb on + strand, within Shewana3_3477 at 4171.391 kb on + strand, within Shewana3_3477 at 4171.399 kb on - strand, within Shewana3_3477 at 4171.504 kb on - strand, within Shewana3_3477 at 4171.578 kb on + strand, within Shewana3_3477 at 4171.624 kb on + strand, within Shewana3_3477 at 4171.698 kb on + strand, within Shewana3_3477 at 4171.809 kb on - strand, within Shewana3_3477 at 4171.840 kb on - strand, within Shewana3_3477 at 4172.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,169,270 - Shewana3_3475 0.53 -0.2 4,169,270 - Shewana3_3475 0.53 +0.7 4,169,430 + Shewana3_3475 0.66 +1.8 4,169,675 + Shewana3_3475 0.85 +1.9 4,169,844 + -0.0 4,169,884 + +3.6 4,169,950 + -1.1 4,169,958 + +0.4 4,170,021 - +0.9 4,170,092 - -0.5 4,170,150 - -1.4 4,170,158 - -0.1 4,170,314 + rihA Shewana3_3476 0.16 +0.6 4,170,314 + rihA Shewana3_3476 0.16 -0.3 4,170,320 - rihA Shewana3_3476 0.17 -0.5 4,170,322 - rihA Shewana3_3476 0.17 +0.1 4,170,322 - rihA Shewana3_3476 0.17 +0.2 4,170,322 - rihA Shewana3_3476 0.17 +0.3 4,170,322 - rihA Shewana3_3476 0.17 +0.4 4,170,361 + rihA Shewana3_3476 0.21 +1.0 4,170,367 + rihA Shewana3_3476 0.22 +0.2 4,170,375 - rihA Shewana3_3476 0.22 -0.6 4,170,405 + rihA Shewana3_3476 0.26 +1.0 4,170,405 + rihA Shewana3_3476 0.26 -1.8 4,170,526 - rihA Shewana3_3476 0.38 +1.0 4,170,532 + rihA Shewana3_3476 0.39 +0.8 4,170,668 + rihA Shewana3_3476 0.53 +0.4 4,170,676 - rihA Shewana3_3476 0.54 -0.2 4,170,722 + rihA Shewana3_3476 0.59 +1.2 4,170,911 - rihA Shewana3_3476 0.78 -0.0 4,171,040 + -0.3 4,171,074 + -0.4 4,171,076 + -0.0 4,171,213 + +1.6 4,171,391 + Shewana3_3477 0.28 -0.3 4,171,391 + Shewana3_3477 0.28 -0.2 4,171,399 - Shewana3_3477 0.29 +0.5 4,171,504 - Shewana3_3477 0.40 -1.7 4,171,578 + Shewana3_3477 0.49 -0.5 4,171,624 + Shewana3_3477 0.54 -1.7 4,171,698 + Shewana3_3477 0.62 -1.0 4,171,809 - Shewana3_3477 0.74 +0.2 4,171,840 - Shewana3_3477 0.77 +0.2 4,172,035 + +0.1
Or see this region's nucleotide sequence