Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3463

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3462 and Shewana3_3463 are separated by 117 nucleotidesShewana3_3463 and Shewana3_3464 are separated by 126 nucleotides Shewana3_3462: Shewana3_3462 - alpha/beta hydrolase domain-containing protein (RefSeq), at 4,151,848 to 4,152,837 _3462 Shewana3_3463: Shewana3_3463 - hypothetical protein (RefSeq), at 4,152,955 to 4,153,410 _3463 Shewana3_3464: Shewana3_3464 - amidase (RefSeq), at 4,153,537 to 4,155,243 _3464 Position (kb) 4152 4153 4154Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4151.989 kb on + strand, within Shewana3_3462at 4151.997 kb on - strand, within Shewana3_3462at 4151.997 kb on - strand, within Shewana3_3462at 4151.997 kb on - strand, within Shewana3_3462at 4151.999 kb on + strand, within Shewana3_3462at 4151.999 kb on + strand, within Shewana3_3462at 4151.999 kb on + strand, within Shewana3_3462at 4152.077 kb on + strand, within Shewana3_3462at 4152.229 kb on - strand, within Shewana3_3462at 4152.271 kb on - strand, within Shewana3_3462at 4152.323 kb on + strand, within Shewana3_3462at 4152.379 kb on - strand, within Shewana3_3462at 4152.455 kb on - strand, within Shewana3_3462at 4152.485 kb on - strand, within Shewana3_3462at 4152.485 kb on - strand, within Shewana3_3462at 4152.698 kb on + strand, within Shewana3_3462at 4152.737 kb on + strand, within Shewana3_3462at 4152.745 kb on - strandat 4152.844 kb on - strandat 4153.033 kb on - strand, within Shewana3_3463at 4153.071 kb on + strand, within Shewana3_3463at 4153.079 kb on - strand, within Shewana3_3463at 4153.100 kb on + strand, within Shewana3_3463at 4153.110 kb on + strand, within Shewana3_3463at 4153.118 kb on - strand, within Shewana3_3463at 4153.128 kb on + strand, within Shewana3_3463at 4153.156 kb on - strand, within Shewana3_3463at 4153.242 kb on + strand, within Shewana3_3463at 4153.313 kb on + strand, within Shewana3_3463at 4153.332 kb on + strand, within Shewana3_3463at 4153.340 kb on - strand, within Shewana3_3463at 4153.360 kb on + strand, within Shewana3_3463at 4153.362 kb on + strand, within Shewana3_3463at 4153.400 kb on + strandat 4153.641 kb on + strandat 4153.648 kb on + strandat 4153.648 kb on + strandat 4153.693 kb on - strandat 4153.759 kb on + strand, within Shewana3_3464at 4153.903 kb on - strand, within Shewana3_3464at 4154.012 kb on + strand, within Shewana3_3464at 4154.020 kb on - strand, within Shewana3_3464at 4154.403 kb on + strand, within Shewana3_3464

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,151,989 + Shewana3_3462 0.14 +1.0
4,151,997 - Shewana3_3462 0.15 -0.1
4,151,997 - Shewana3_3462 0.15 -0.3
4,151,997 - Shewana3_3462 0.15 +1.2
4,151,999 + Shewana3_3462 0.15 -0.3
4,151,999 + Shewana3_3462 0.15 -0.3
4,151,999 + Shewana3_3462 0.15 +0.7
4,152,077 + Shewana3_3462 0.23 +0.3
4,152,229 - Shewana3_3462 0.38 -1.0
4,152,271 - Shewana3_3462 0.43 +0.4
4,152,323 + Shewana3_3462 0.48 -0.1
4,152,379 - Shewana3_3462 0.54 +0.2
4,152,455 - Shewana3_3462 0.61 -1.0
4,152,485 - Shewana3_3462 0.64 -0.7
4,152,485 - Shewana3_3462 0.64 -0.5
4,152,698 + Shewana3_3462 0.86 -0.7
4,152,737 + Shewana3_3462 0.90 +0.1
4,152,745 - -0.1
4,152,844 - -0.2
4,153,033 - Shewana3_3463 0.17 +0.0
4,153,071 + Shewana3_3463 0.25 +2.8
4,153,079 - Shewana3_3463 0.27 +0.6
4,153,100 + Shewana3_3463 0.32 -0.2
4,153,110 + Shewana3_3463 0.34 -0.3
4,153,118 - Shewana3_3463 0.36 -0.1
4,153,128 + Shewana3_3463 0.38 -0.2
4,153,156 - Shewana3_3463 0.44 +0.1
4,153,242 + Shewana3_3463 0.63 +0.5
4,153,313 + Shewana3_3463 0.79 +1.6
4,153,332 + Shewana3_3463 0.83 -2.2
4,153,340 - Shewana3_3463 0.84 -0.3
4,153,360 + Shewana3_3463 0.89 +0.7
4,153,362 + Shewana3_3463 0.89 -0.7
4,153,400 + -0.3
4,153,641 + +1.2
4,153,648 + +2.6
4,153,648 + +1.4
4,153,693 - +1.8
4,153,759 + Shewana3_3464 0.13 -0.1
4,153,903 - Shewana3_3464 0.21 +1.4
4,154,012 + Shewana3_3464 0.28 +0.9
4,154,020 - Shewana3_3464 0.28 +2.4
4,154,403 + Shewana3_3464 0.51 +1.8

Or see this region's nucleotide sequence