Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3436
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,111,149 | - | Shewana3_3435 | 0.16 | -1.2 | |
4,111,187 | + | Shewana3_3435 | 0.20 | -0.7 | |
4,111,187 | + | Shewana3_3435 | 0.20 | -1.3 | |
4,111,440 | - | Shewana3_3435 | 0.48 | +2.6 | |
4,111,481 | + | Shewana3_3435 | 0.53 | +3.6 | |
4,111,578 | + | Shewana3_3435 | 0.64 | +0.8 | |
4,111,930 | + | -0.2 | |||
4,111,930 | + | -0.6 | |||
4,111,930 | + | +0.2 | |||
4,111,930 | + | +1.1 | |||
4,111,938 | - | -0.7 | |||
4,111,938 | - | +1.0 | |||
4,111,953 | + | +0.3 | |||
4,111,953 | + | -0.0 | |||
4,111,953 | + | +0.7 | |||
4,111,961 | - | +1.3 | |||
4,114,484 | + | +0.8 | |||
4,114,492 | - | -1.2 | |||
4,114,499 | + | +0.2 | |||
4,114,627 | - | +0.3 | |||
4,114,787 | - | +1.1 | |||
4,114,884 | + | Shewana3_3437 | 0.17 | -0.5 | |
4,114,899 | + | Shewana3_3437 | 0.18 | -0.5 | |
4,114,907 | - | Shewana3_3437 | 0.18 | -0.8 | |
4,114,937 | - | Shewana3_3437 | 0.20 | +0.9 | |
4,114,987 | - | Shewana3_3437 | 0.24 | -0.0 | |
4,115,131 | + | Shewana3_3437 | 0.34 | -0.6 |
Or see this region's nucleotide sequence