Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3392

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3391 and Shewana3_3392 are separated by 685 nucleotidesShewana3_3392 and Shewana3_3393 are separated by 387 nucleotides Shewana3_3391: Shewana3_3391 - hypothetical protein (RefSeq), at 4,060,832 to 4,061,092 _3391 Shewana3_3392: Shewana3_3392 - hypothetical protein (RefSeq), at 4,061,778 to 4,061,978 _3392 Shewana3_3393: Shewana3_3393 - ABC transporter related (RefSeq), at 4,062,366 to 4,064,279 _3393 Position (kb) 4061 4062Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 4060.797 kb on - strandat 4060.912 kb on + strand, within Shewana3_3391at 4060.954 kb on - strand, within Shewana3_3391at 4060.954 kb on - strand, within Shewana3_3391at 4060.960 kb on - strand, within Shewana3_3391at 4060.960 kb on - strand, within Shewana3_3391at 4060.967 kb on - strand, within Shewana3_3391at 4060.967 kb on - strand, within Shewana3_3391at 4061.018 kb on + strand, within Shewana3_3391at 4061.089 kb on + strandat 4061.089 kb on + strandat 4061.097 kb on - strandat 4061.720 kb on - strandat 4061.720 kb on - strandat 4061.720 kb on - strandat 4061.769 kb on + strandat 4061.785 kb on + strandat 4061.785 kb on + strandat 4061.934 kb on - strand, within Shewana3_3392at 4062.006 kb on - strandat 4062.139 kb on + strandat 4062.208 kb on + strandat 4062.216 kb on - strandat 4062.316 kb on - strandat 4062.329 kb on + strandat 4062.387 kb on + strandat 4062.395 kb on - strandat 4062.395 kb on - strandat 4062.411 kb on - strandat 4062.503 kb on + strandat 4062.523 kb on - strandat 4062.741 kb on - strand, within Shewana3_3393at 4062.768 kb on + strand, within Shewana3_3393at 4062.797 kb on - strand, within Shewana3_3393at 4062.855 kb on + strand, within Shewana3_3393at 4062.938 kb on + strand, within Shewana3_3393

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,060,797 - -0.0
4,060,912 + Shewana3_3391 0.31 -0.7
4,060,954 - Shewana3_3391 0.47 -0.1
4,060,954 - Shewana3_3391 0.47 +0.3
4,060,960 - Shewana3_3391 0.49 -1.3
4,060,960 - Shewana3_3391 0.49 +0.2
4,060,967 - Shewana3_3391 0.52 +0.3
4,060,967 - Shewana3_3391 0.52 -0.3
4,061,018 + Shewana3_3391 0.71 -0.0
4,061,089 + +0.3
4,061,089 + -0.1
4,061,097 - -0.0
4,061,720 - -0.4
4,061,720 - -0.6
4,061,720 - -1.3
4,061,769 + +0.4
4,061,785 + -1.0
4,061,785 + -0.4
4,061,934 - Shewana3_3392 0.78 -2.6
4,062,006 - +0.4
4,062,139 + +0.5
4,062,208 + +0.4
4,062,216 - +0.3
4,062,316 - +0.9
4,062,329 + +8.6
4,062,387 + +0.8
4,062,395 - +0.2
4,062,395 - +0.1
4,062,411 - -0.4
4,062,503 + +3.0
4,062,523 - -1.1
4,062,741 - Shewana3_3393 0.20 +1.2
4,062,768 + Shewana3_3393 0.21 -1.3
4,062,797 - Shewana3_3393 0.23 +0.6
4,062,855 + Shewana3_3393 0.26 +1.2
4,062,938 + Shewana3_3393 0.30 -0.1

Or see this region's nucleotide sequence