Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3392
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,060,797 | - | -0.0 | |||
4,060,912 | + | Shewana3_3391 | 0.31 | -0.7 | |
4,060,954 | - | Shewana3_3391 | 0.47 | -0.1 | |
4,060,954 | - | Shewana3_3391 | 0.47 | +0.3 | |
4,060,960 | - | Shewana3_3391 | 0.49 | -1.3 | |
4,060,960 | - | Shewana3_3391 | 0.49 | +0.2 | |
4,060,967 | - | Shewana3_3391 | 0.52 | +0.3 | |
4,060,967 | - | Shewana3_3391 | 0.52 | -0.3 | |
4,061,018 | + | Shewana3_3391 | 0.71 | -0.0 | |
4,061,089 | + | +0.3 | |||
4,061,089 | + | -0.1 | |||
4,061,097 | - | -0.0 | |||
4,061,720 | - | -0.4 | |||
4,061,720 | - | -0.6 | |||
4,061,720 | - | -1.3 | |||
4,061,769 | + | +0.4 | |||
4,061,785 | + | -1.0 | |||
4,061,785 | + | -0.4 | |||
4,061,934 | - | Shewana3_3392 | 0.78 | -2.6 | |
4,062,006 | - | +0.4 | |||
4,062,139 | + | +0.5 | |||
4,062,208 | + | +0.4 | |||
4,062,216 | - | +0.3 | |||
4,062,316 | - | +0.9 | |||
4,062,329 | + | +8.6 | |||
4,062,387 | + | +0.8 | |||
4,062,395 | - | +0.2 | |||
4,062,395 | - | +0.1 | |||
4,062,411 | - | -0.4 | |||
4,062,503 | + | +3.0 | |||
4,062,523 | - | -1.1 | |||
4,062,741 | - | Shewana3_3393 | 0.20 | +1.2 | |
4,062,768 | + | Shewana3_3393 | 0.21 | -1.3 | |
4,062,797 | - | Shewana3_3393 | 0.23 | +0.6 | |
4,062,855 | + | Shewana3_3393 | 0.26 | +1.2 | |
4,062,938 | + | Shewana3_3393 | 0.30 | -0.1 |
Or see this region's nucleotide sequence