Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3371

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3370 and Shewana3_3371 are separated by 588 nucleotidesShewana3_3371 and Shewana3_3372 are separated by 12 nucleotidesShewana3_3372 and Shewana3_3373 are separated by 97 nucleotides Shewana3_3370: Shewana3_3370 - hypothetical protein (RefSeq), at 4,042,053 to 4,042,370 _3370 Shewana3_3371: Shewana3_3371 - hypothetical protein (RefSeq), at 4,042,959 to 4,043,522 _3371 Shewana3_3372: Shewana3_3372 - no description, at 4,043,535 to 4,043,882 _3372 Shewana3_3373: Shewana3_3373 - Na(+)-translocating NADH-quinone reductase subunit F (RefSeq), at 4,043,980 to 4,045,197 _3373 Position (kb) 4042 4043 4044Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 4041.993 kb on + strandat 4041.999 kb on + strandat 4042.007 kb on - strandat 4042.007 kb on - strandat 4042.150 kb on + strand, within Shewana3_3370at 4042.230 kb on - strand, within Shewana3_3370at 4042.384 kb on - strandat 4042.510 kb on - strandat 4042.630 kb on - strandat 4042.630 kb on - strandat 4042.667 kb on - strandat 4042.847 kb on + strandat 4042.892 kb on + strandat 4042.897 kb on + strandat 4042.897 kb on - strandat 4042.999 kb on + strandat 4043.002 kb on - strandat 4043.262 kb on + strand, within Shewana3_3371at 4043.269 kb on + strand, within Shewana3_3371at 4043.380 kb on - strand, within Shewana3_3371at 4043.384 kb on + strand, within Shewana3_3371at 4043.490 kb on - strandat 4043.507 kb on + strandat 4043.569 kb on + strandat 4043.694 kb on - strand, within Shewana3_3372at 4043.701 kb on + strand, within Shewana3_3372at 4043.701 kb on + strand, within Shewana3_3372at 4043.813 kb on + strand, within Shewana3_3372at 4043.938 kb on + strandat 4044.055 kb on + strandat 4044.099 kb on - strandat 4044.314 kb on + strand, within Shewana3_3373at 4044.356 kb on - strand, within Shewana3_3373at 4044.435 kb on + strand, within Shewana3_3373at 4044.454 kb on - strand, within Shewana3_3373

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,041,993 + +1.6
4,041,999 + +1.2
4,042,007 - +0.2
4,042,007 - -0.8
4,042,150 + Shewana3_3370 0.31 -0.5
4,042,230 - Shewana3_3370 0.56 -0.2
4,042,384 - +5.8
4,042,510 - +2.1
4,042,630 - -0.7
4,042,630 - -0.6
4,042,667 - -1.6
4,042,847 + +0.9
4,042,892 + +1.2
4,042,897 + -1.6
4,042,897 - -0.2
4,042,999 + -1.2
4,043,002 - +2.6
4,043,262 + Shewana3_3371 0.54 -0.8
4,043,269 + Shewana3_3371 0.55 +0.6
4,043,380 - Shewana3_3371 0.75 -1.6
4,043,384 + Shewana3_3371 0.75 -1.6
4,043,490 - -0.2
4,043,507 + -0.2
4,043,569 + -0.6
4,043,694 - Shewana3_3372 0.46 +0.1
4,043,701 + Shewana3_3372 0.48 +0.7
4,043,701 + Shewana3_3372 0.48 +0.2
4,043,813 + Shewana3_3372 0.80 +0.2
4,043,938 + -0.3
4,044,055 + -0.0
4,044,099 - -0.5
4,044,314 + Shewana3_3373 0.27 -0.7
4,044,356 - Shewana3_3373 0.31 +0.0
4,044,435 + Shewana3_3373 0.37 -0.9
4,044,454 - Shewana3_3373 0.39 +0.4

Or see this region's nucleotide sequence