Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3362 and Shewana3_3363 are separated by 161 nucleotides Shewana3_3363 and Shewana3_3364 are separated by 220 nucleotides Shewana3_3364 and Shewana3_3365 are separated by 59 nucleotides
Shewana3_3362: Shewana3_3362 - sodium:dicarboxylate symporter (RefSeq), at 4,031,827 to 4,033,149
_3362
Shewana3_3363: Shewana3_3363 - hypothetical protein (RefSeq), at 4,033,311 to 4,033,607
_3363
Shewana3_3364: Shewana3_3364 - GCN5-related N-acetyltransferase (RefSeq), at 4,033,828 to 4,034,271
_3364
Shewana3_3365: Shewana3_3365 - serine transporter, putative (RefSeq), at 4,034,331 to 4,035,623
_3365
Position (kb)
4033
4034 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 4032.505 kb on - strand, within Shewana3_3362 at 4032.515 kb on + strand, within Shewana3_3362 at 4032.554 kb on - strand, within Shewana3_3362 at 4032.617 kb on + strand, within Shewana3_3362 at 4032.731 kb on - strand, within Shewana3_3362 at 4032.782 kb on - strand, within Shewana3_3362 at 4032.921 kb on + strand, within Shewana3_3362 at 4033.014 kb on + strand, within Shewana3_3362 at 4033.059 kb on + strand at 4033.099 kb on + strand at 4033.128 kb on + strand at 4033.180 kb on + strand at 4033.187 kb on + strand at 4033.187 kb on + strand at 4033.187 kb on + strand at 4033.187 kb on + strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.205 kb on + strand at 4033.444 kb on - strand, within Shewana3_3363 at 4033.516 kb on - strand, within Shewana3_3363 at 4033.628 kb on - strand at 4033.775 kb on - strand at 4033.792 kb on - strand at 4033.908 kb on - strand, within Shewana3_3364 at 4033.932 kb on + strand, within Shewana3_3364 at 4034.121 kb on + strand, within Shewana3_3364 at 4034.129 kb on - strand, within Shewana3_3364 at 4034.244 kb on - strand at 4034.439 kb on - strand at 4034.439 kb on - strand at 4034.451 kb on - strand at 4034.561 kb on - strand, within Shewana3_3365 at 4034.564 kb on + strand, within Shewana3_3365
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,032,505 - Shewana3_3362 0.51 -0.5 4,032,515 + Shewana3_3362 0.52 -1.2 4,032,554 - Shewana3_3362 0.55 +0.4 4,032,617 + Shewana3_3362 0.60 -0.1 4,032,731 - Shewana3_3362 0.68 -0.4 4,032,782 - Shewana3_3362 0.72 +0.9 4,032,921 + Shewana3_3362 0.83 -0.2 4,033,014 + Shewana3_3362 0.90 +1.5 4,033,059 + -1.0 4,033,099 + +7.5 4,033,128 + -0.0 4,033,180 + -0.1 4,033,187 + -0.6 4,033,187 + +1.3 4,033,187 + -0.5 4,033,187 + -0.9 4,033,195 - +0.8 4,033,195 - -1.3 4,033,195 - -1.3 4,033,195 - -0.7 4,033,195 - -1.0 4,033,195 - -0.5 4,033,205 + -0.0 4,033,444 - Shewana3_3363 0.45 +0.8 4,033,516 - Shewana3_3363 0.69 -0.2 4,033,628 - -0.1 4,033,775 - -1.4 4,033,792 - -0.2 4,033,908 - Shewana3_3364 0.18 -0.3 4,033,932 + Shewana3_3364 0.23 +0.2 4,034,121 + Shewana3_3364 0.66 -0.4 4,034,129 - Shewana3_3364 0.68 +1.0 4,034,244 - +0.3 4,034,439 - -0.9 4,034,439 - -0.7 4,034,451 - -0.5 4,034,561 - Shewana3_3365 0.18 -2.0 4,034,564 + Shewana3_3365 0.18 +1.7
Or see this region's nucleotide sequence