Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3337
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,001,578 | - | Shewana3_3336 | 0.42 | +2.9 | |
4,001,703 | - | Shewana3_3336 | 0.52 | +3.3 | |
4,001,765 | - | Shewana3_3336 | 0.57 | +1.6 | |
4,001,850 | - | Shewana3_3336 | 0.64 | +2.6 | |
4,002,030 | + | Shewana3_3336 | 0.78 | +3.4 | |
4,002,170 | + | Shewana3_3336 | 0.89 | +3.4 | |
4,002,269 | + | +0.9 | |||
4,002,302 | + | -0.1 | |||
4,002,372 | + | -0.5 | |||
4,002,393 | + | -0.2 | |||
4,002,456 | + | -0.1 | |||
4,002,815 | - | Shewana3_3337 | 0.20 | -0.2 | |
4,003,099 | + | Shewana3_3337 | 0.43 | +0.9 | |
4,003,223 | + | Shewana3_3337 | 0.53 | -0.4 | |
4,003,263 | + | Shewana3_3337 | 0.56 | +2.0 | |
4,003,361 | + | Shewana3_3337 | 0.65 | -0.0 | |
4,003,412 | + | Shewana3_3337 | 0.69 | -0.5 | |
4,003,421 | - | Shewana3_3337 | 0.69 | +0.0 | |
4,003,507 | - | Shewana3_3337 | 0.77 | +1.2 | |
4,003,789 | - | +0.3 | |||
4,003,849 | + | -0.0 | |||
4,003,891 | + | -0.9 | |||
4,004,094 | - | -1.3 | |||
4,004,380 | + | Shewana3_3338 | 0.18 | -0.1 | |
4,004,632 | - | Shewana3_3338 | 0.26 | -0.3 | |
4,004,649 | - | Shewana3_3338 | 0.27 | -0.5 | |
4,004,745 | - | Shewana3_3338 | 0.30 | +3.6 | |
4,004,755 | - | Shewana3_3338 | 0.30 | -0.8 | |
4,004,763 | - | Shewana3_3338 | 0.30 | +0.6 |
Or see this region's nucleotide sequence