Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3336 and Shewana3_3337 are separated by 267 nucleotides Shewana3_3337 and Shewana3_3338 overlap by 1 nucleotides
Shewana3_3336: Shewana3_3336 - ATP-dependent RNA helicase SrmB (RefSeq), at 4,001,048 to 4,002,307
_3336
Shewana3_3337: Shewana3_3337 - RND family efflux transporter MFP subunit (RefSeq), at 4,002,575 to 4,003,792
_3337
Shewana3_3338: Shewana3_3338 - acriflavin resistance protein (RefSeq), at 4,003,792 to 4,006,995
_3338
Position (kb)
4002
4003
4004 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4001.578 kb on - strand, within Shewana3_3336 at 4001.703 kb on - strand, within Shewana3_3336 at 4001.765 kb on - strand, within Shewana3_3336 at 4001.850 kb on - strand, within Shewana3_3336 at 4002.030 kb on + strand, within Shewana3_3336 at 4002.170 kb on + strand, within Shewana3_3336 at 4002.269 kb on + strand at 4002.302 kb on + strand at 4002.372 kb on + strand at 4002.393 kb on + strand at 4002.456 kb on + strand at 4002.815 kb on - strand, within Shewana3_3337 at 4003.099 kb on + strand, within Shewana3_3337 at 4003.223 kb on + strand, within Shewana3_3337 at 4003.263 kb on + strand, within Shewana3_3337 at 4003.361 kb on + strand, within Shewana3_3337 at 4003.412 kb on + strand, within Shewana3_3337 at 4003.421 kb on - strand, within Shewana3_3337 at 4003.507 kb on - strand, within Shewana3_3337 at 4003.789 kb on - strand at 4003.849 kb on + strand at 4003.891 kb on + strand at 4004.094 kb on - strand at 4004.380 kb on + strand, within Shewana3_3338 at 4004.632 kb on - strand, within Shewana3_3338 at 4004.649 kb on - strand, within Shewana3_3338 at 4004.745 kb on - strand, within Shewana3_3338 at 4004.755 kb on - strand, within Shewana3_3338 at 4004.763 kb on - strand, within Shewana3_3338
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,001,578 - Shewana3_3336 0.42 +2.9 4,001,703 - Shewana3_3336 0.52 +3.3 4,001,765 - Shewana3_3336 0.57 +1.6 4,001,850 - Shewana3_3336 0.64 +2.6 4,002,030 + Shewana3_3336 0.78 +3.4 4,002,170 + Shewana3_3336 0.89 +3.4 4,002,269 + +0.9 4,002,302 + -0.1 4,002,372 + -0.5 4,002,393 + -0.2 4,002,456 + -0.1 4,002,815 - Shewana3_3337 0.20 -0.2 4,003,099 + Shewana3_3337 0.43 +0.9 4,003,223 + Shewana3_3337 0.53 -0.4 4,003,263 + Shewana3_3337 0.56 +2.0 4,003,361 + Shewana3_3337 0.65 -0.0 4,003,412 + Shewana3_3337 0.69 -0.5 4,003,421 - Shewana3_3337 0.69 +0.0 4,003,507 - Shewana3_3337 0.77 +1.2 4,003,789 - +0.3 4,003,849 + -0.0 4,003,891 + -0.9 4,004,094 - -1.3 4,004,380 + Shewana3_3338 0.18 -0.1 4,004,632 - Shewana3_3338 0.26 -0.3 4,004,649 - Shewana3_3338 0.27 -0.5 4,004,745 - Shewana3_3338 0.30 +3.6 4,004,755 - Shewana3_3338 0.30 -0.8 4,004,763 - Shewana3_3338 0.30 +0.6
Or see this region's nucleotide sequence