Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3326 and Shewana3_3327 are separated by 73 nucleotides Shewana3_3327 and Shewana3_3328 are separated by 13 nucleotides Shewana3_3328 and Shewana3_3329 are separated by 38 nucleotides Shewana3_3329 and Shewana3_3330 are separated by 92 nucleotides Shewana3_3330 and Shewana3_3331 are separated by 150 nucleotides
Shewana3_3326: Shewana3_3326 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,987,431 to 3,989,008
_3326
Shewana3_3327: Shewana3_3327 - GCN5-related N-acetyltransferase (RefSeq), at 3,989,082 to 3,989,501
_3327
Shewana3_3328: Shewana3_3328 - hypothetical protein (RefSeq), at 3,989,515 to 3,989,844
_3328
Shewana3_3329: Shewana3_3329 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 3,989,883 to 3,991,607
_3329
Shewana3_3330: Shewana3_3330 - thiol:disulfide interchange protein DsbC (RefSeq), at 3,991,700 to 3,992,425
_3330
Shewana3_3331: Shewana3_3331 - tyrosine recombinase XerD (RefSeq), at 3,992,576 to 3,993,478
_3331
Position (kb)
3989
3990
3991
3992 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3989.160 kb on + strand, within Shewana3_3327 at 3989.162 kb on + strand, within Shewana3_3327 at 3989.196 kb on + strand, within Shewana3_3327 at 3989.261 kb on - strand, within Shewana3_3327 at 3989.418 kb on - strand, within Shewana3_3327 at 3989.425 kb on + strand, within Shewana3_3327 at 3989.425 kb on + strand, within Shewana3_3327 at 3989.490 kb on - strand at 3989.580 kb on + strand, within Shewana3_3328 at 3989.791 kb on - strand, within Shewana3_3328 at 3989.852 kb on + strand at 3989.860 kb on - strand at 3990.030 kb on + strand at 3990.037 kb on + strand at 3990.038 kb on - strand at 3990.241 kb on + strand, within Shewana3_3329 at 3990.241 kb on + strand, within Shewana3_3329 at 3990.268 kb on + strand, within Shewana3_3329 at 3990.317 kb on - strand, within Shewana3_3329 at 3990.573 kb on - strand, within Shewana3_3329 at 3990.754 kb on - strand, within Shewana3_3329 at 3990.754 kb on - strand, within Shewana3_3329 at 3990.801 kb on - strand, within Shewana3_3329 at 3990.801 kb on - strand, within Shewana3_3329 at 3990.837 kb on + strand, within Shewana3_3329 at 3991.004 kb on - strand, within Shewana3_3329 at 3991.256 kb on + strand, within Shewana3_3329 at 3991.353 kb on + strand, within Shewana3_3329 at 3991.353 kb on + strand, within Shewana3_3329 at 3991.442 kb on + strand at 3991.518 kb on - strand at 3991.530 kb on - strand at 3991.579 kb on - strand at 3991.617 kb on + strand at 3991.656 kb on + strand at 3991.664 kb on - strand at 3991.719 kb on - strand at 3991.793 kb on + strand, within Shewana3_3330 at 3991.855 kb on - strand, within Shewana3_3330 at 3992.080 kb on - strand, within Shewana3_3330 at 3992.214 kb on - strand, within Shewana3_3330 at 3992.229 kb on - strand, within Shewana3_3330 at 3992.282 kb on - strand, within Shewana3_3330 at 3992.364 kb on + strand at 3992.372 kb on - strand at 3992.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,989,160 + Shewana3_3327 0.19 +1.5 3,989,162 + Shewana3_3327 0.19 -0.8 3,989,196 + Shewana3_3327 0.27 +0.7 3,989,261 - Shewana3_3327 0.43 +0.3 3,989,418 - Shewana3_3327 0.80 -0.9 3,989,425 + Shewana3_3327 0.82 +7.0 3,989,425 + Shewana3_3327 0.82 -0.4 3,989,490 - -0.0 3,989,580 + Shewana3_3328 0.20 +0.6 3,989,791 - Shewana3_3328 0.84 +0.3 3,989,852 + +1.1 3,989,860 - +0.5 3,990,030 + +1.2 3,990,037 + +2.5 3,990,038 - -1.3 3,990,241 + Shewana3_3329 0.21 -0.8 3,990,241 + Shewana3_3329 0.21 +0.0 3,990,268 + Shewana3_3329 0.22 +1.7 3,990,317 - Shewana3_3329 0.25 -0.8 3,990,573 - Shewana3_3329 0.40 -0.6 3,990,754 - Shewana3_3329 0.50 -1.2 3,990,754 - Shewana3_3329 0.50 -1.0 3,990,801 - Shewana3_3329 0.53 -2.0 3,990,801 - Shewana3_3329 0.53 -1.2 3,990,837 + Shewana3_3329 0.55 +0.1 3,991,004 - Shewana3_3329 0.65 -0.1 3,991,256 + Shewana3_3329 0.80 -1.6 3,991,353 + Shewana3_3329 0.85 -0.8 3,991,353 + Shewana3_3329 0.85 -1.3 3,991,442 + -1.5 3,991,518 - +0.1 3,991,530 - -0.8 3,991,579 - -0.2 3,991,617 + -0.3 3,991,656 + +3.5 3,991,664 - +0.1 3,991,719 - -0.3 3,991,793 + Shewana3_3330 0.13 +0.1 3,991,855 - Shewana3_3330 0.21 +0.2 3,992,080 - Shewana3_3330 0.52 +0.3 3,992,214 - Shewana3_3330 0.71 +0.3 3,992,229 - Shewana3_3330 0.73 -0.3 3,992,282 - Shewana3_3330 0.80 -0.6 3,992,364 + +7.7 3,992,372 - +0.7 3,992,377 - -1.0
Or see this region's nucleotide sequence