Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3324 and Shewana3_3325 are separated by 323 nucleotides Shewana3_3325 and Shewana3_3326 are separated by 233 nucleotides
Shewana3_3324: Shewana3_3324 - peptidase M17, leucyl aminopeptidase domain-containing protein (RefSeq), at 3,984,769 to 3,986,304
_3324
Shewana3_3325: Shewana3_3325 - alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen (RefSeq), at 3,986,628 to 3,987,197
_3325
Shewana3_3326: Shewana3_3326 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,987,431 to 3,989,008
_3326
Position (kb)
3986
3987
3988 Strain fitness (log2 ratio)
-2
-1
0
1 at 3985.794 kb on + strand, within Shewana3_3324 at 3985.835 kb on - strand, within Shewana3_3324 at 3986.120 kb on + strand, within Shewana3_3324 at 3986.172 kb on + strand at 3986.180 kb on - strand at 3986.286 kb on + strand at 3986.294 kb on - strand at 3986.354 kb on + strand at 3986.362 kb on - strand at 3986.362 kb on - strand at 3986.544 kb on - strand at 3986.640 kb on + strand at 3986.789 kb on - strand, within Shewana3_3325 at 3986.932 kb on + strand, within Shewana3_3325 at 3986.980 kb on + strand, within Shewana3_3325 at 3986.988 kb on - strand, within Shewana3_3325 at 3986.988 kb on - strand, within Shewana3_3325 at 3987.096 kb on + strand, within Shewana3_3325 at 3987.096 kb on + strand, within Shewana3_3325 at 3987.168 kb on - strand at 3987.354 kb on + strand at 3987.371 kb on + strand at 3987.371 kb on + strand at 3987.371 kb on + strand at 3987.379 kb on - strand at 3987.384 kb on - strand at 3987.667 kb on + strand, within Shewana3_3326 at 3987.932 kb on + strand, within Shewana3_3326 at 3987.940 kb on - strand, within Shewana3_3326 at 3988.118 kb on + strand, within Shewana3_3326
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,985,794 + Shewana3_3324 0.67 -1.0 3,985,835 - Shewana3_3324 0.69 -1.8 3,986,120 + Shewana3_3324 0.88 +0.5 3,986,172 + -0.2 3,986,180 - +0.2 3,986,286 + +0.3 3,986,294 - -0.1 3,986,354 + -0.2 3,986,362 - +1.0 3,986,362 - -0.3 3,986,544 - -1.1 3,986,640 + -0.6 3,986,789 - Shewana3_3325 0.28 -2.1 3,986,932 + Shewana3_3325 0.53 -1.5 3,986,980 + Shewana3_3325 0.62 -1.3 3,986,988 - Shewana3_3325 0.63 -1.7 3,986,988 - Shewana3_3325 0.63 +0.7 3,987,096 + Shewana3_3325 0.82 -1.1 3,987,096 + Shewana3_3325 0.82 -0.4 3,987,168 - +0.7 3,987,354 + -0.6 3,987,371 + -1.3 3,987,371 + -0.3 3,987,371 + -2.3 3,987,379 - -1.3 3,987,384 - -1.4 3,987,667 + Shewana3_3326 0.15 -0.8 3,987,932 + Shewana3_3326 0.32 -0.9 3,987,940 - Shewana3_3326 0.32 -0.7 3,988,118 + Shewana3_3326 0.44 -1.7
Or see this region's nucleotide sequence