Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3325
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,985,794 | + | Shewana3_3324 | 0.67 | -1.0 | |
3,985,835 | - | Shewana3_3324 | 0.69 | -1.8 | |
3,986,120 | + | Shewana3_3324 | 0.88 | +0.5 | |
3,986,172 | + | -0.2 | |||
3,986,180 | - | +0.2 | |||
3,986,286 | + | +0.3 | |||
3,986,294 | - | -0.1 | |||
3,986,354 | + | -0.2 | |||
3,986,362 | - | +1.0 | |||
3,986,362 | - | -0.3 | |||
3,986,544 | - | -1.1 | |||
3,986,640 | + | -0.6 | |||
3,986,789 | - | Shewana3_3325 | 0.28 | -2.1 | |
3,986,932 | + | Shewana3_3325 | 0.53 | -1.5 | |
3,986,980 | + | Shewana3_3325 | 0.62 | -1.3 | |
3,986,988 | - | Shewana3_3325 | 0.63 | -1.7 | |
3,986,988 | - | Shewana3_3325 | 0.63 | +0.7 | |
3,987,096 | + | Shewana3_3325 | 0.82 | -1.1 | |
3,987,096 | + | Shewana3_3325 | 0.82 | -0.4 | |
3,987,168 | - | +0.7 | |||
3,987,354 | + | -0.6 | |||
3,987,371 | + | -1.3 | |||
3,987,371 | + | -0.3 | |||
3,987,371 | + | -2.3 | |||
3,987,379 | - | -1.3 | |||
3,987,384 | - | -1.4 | |||
3,987,667 | + | Shewana3_3326 | 0.15 | -0.8 | |
3,987,932 | + | Shewana3_3326 | 0.32 | -0.9 | |
3,987,940 | - | Shewana3_3326 | 0.32 | -0.7 | |
3,988,118 | + | Shewana3_3326 | 0.44 | -1.7 |
Or see this region's nucleotide sequence