Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3276

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3275 and Shewana3_3276 are separated by 87 nucleotidesShewana3_3276 and cobS overlap by 4 nucleotidescobS and cobT are separated by 96 nucleotides Shewana3_3275: Shewana3_3275 - cobyric acid synthase (RefSeq), at 3,914,494 to 3,916,119 _3275 Shewana3_3276: Shewana3_3276 - adenosylcobinamide kinase (RefSeq), at 3,916,207 to 3,916,809 _3276 Shewana3_3277: cobS - cobalamin synthase (RefSeq), at 3,916,806 to 3,917,594 cobS Shewana3_3278: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 3,917,691 to 3,918,743 cobT Position (kb) 3916 3917Strain fitness (log2 ratio) -1 0 1 2 3at 3915.212 kb on - strand, within Shewana3_3275at 3915.212 kb on - strand, within Shewana3_3275at 3915.357 kb on - strand, within Shewana3_3275at 3915.510 kb on - strand, within Shewana3_3275at 3915.541 kb on + strand, within Shewana3_3275at 3915.669 kb on - strand, within Shewana3_3275at 3915.739 kb on + strand, within Shewana3_3275at 3915.739 kb on + strand, within Shewana3_3275at 3915.766 kb on - strand, within Shewana3_3275at 3915.888 kb on - strand, within Shewana3_3275at 3915.890 kb on + strand, within Shewana3_3275at 3916.004 kb on - strandat 3916.046 kb on - strandat 3916.134 kb on - strandat 3916.416 kb on + strand, within Shewana3_3276at 3916.416 kb on + strand, within Shewana3_3276at 3916.498 kb on - strand, within Shewana3_3276at 3916.536 kb on + strand, within Shewana3_3276at 3916.631 kb on + strand, within Shewana3_3276at 3916.651 kb on + strand, within Shewana3_3276at 3916.821 kb on - strandat 3916.940 kb on - strand, within cobSat 3916.940 kb on - strand, within cobSat 3916.983 kb on - strand, within cobSat 3916.983 kb on - strand, within cobSat 3917.022 kb on - strand, within cobSat 3917.129 kb on + strand, within cobSat 3917.175 kb on - strand, within cobSat 3917.249 kb on + strand, within cobSat 3917.359 kb on + strand, within cobSat 3917.364 kb on + strand, within cobSat 3917.367 kb on - strand, within cobSat 3917.376 kb on - strand, within cobSat 3917.411 kb on - strand, within cobSat 3917.428 kb on + strand, within cobSat 3917.512 kb on - strand, within cobSat 3917.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,915,212 - Shewana3_3275 0.44 -0.7
3,915,212 - Shewana3_3275 0.44 -0.1
3,915,357 - Shewana3_3275 0.53 +0.2
3,915,510 - Shewana3_3275 0.62 +0.1
3,915,541 + Shewana3_3275 0.64 -0.7
3,915,669 - Shewana3_3275 0.72 +1.0
3,915,739 + Shewana3_3275 0.77 -0.0
3,915,739 + Shewana3_3275 0.77 -0.4
3,915,766 - Shewana3_3275 0.78 -0.0
3,915,888 - Shewana3_3275 0.86 -0.2
3,915,890 + Shewana3_3275 0.86 -1.1
3,916,004 - +0.9
3,916,046 - -0.6
3,916,134 - -1.1
3,916,416 + Shewana3_3276 0.35 -0.3
3,916,416 + Shewana3_3276 0.35 -0.1
3,916,498 - Shewana3_3276 0.48 -0.5
3,916,536 + Shewana3_3276 0.55 +0.9
3,916,631 + Shewana3_3276 0.70 -1.4
3,916,651 + Shewana3_3276 0.74 -0.6
3,916,821 - +1.4
3,916,940 - cobS Shewana3_3277 0.17 -0.4
3,916,940 - cobS Shewana3_3277 0.17 -0.1
3,916,983 - cobS Shewana3_3277 0.22 +0.1
3,916,983 - cobS Shewana3_3277 0.22 -0.4
3,917,022 - cobS Shewana3_3277 0.27 -1.2
3,917,129 + cobS Shewana3_3277 0.41 +3.5
3,917,175 - cobS Shewana3_3277 0.47 -0.5
3,917,249 + cobS Shewana3_3277 0.56 +2.0
3,917,359 + cobS Shewana3_3277 0.70 +0.3
3,917,364 + cobS Shewana3_3277 0.71 -0.5
3,917,367 - cobS Shewana3_3277 0.71 -0.6
3,917,376 - cobS Shewana3_3277 0.72 -0.0
3,917,411 - cobS Shewana3_3277 0.77 +0.1
3,917,428 + cobS Shewana3_3277 0.79 +0.1
3,917,512 - cobS Shewana3_3277 0.89 -0.0
3,917,780 - +0.5

Or see this region's nucleotide sequence