Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3249 and Shewana3_3250 are separated by 19 nucleotides Shewana3_3250 and Shewana3_3251 are separated by 197 nucleotides Shewana3_3251 and Shewana3_3252 are separated by 21 nucleotides Shewana3_3252 and Shewana3_3253 are separated by 58 nucleotides
Shewana3_3249: Shewana3_3249 - UspA domain-containing protein (RefSeq), at 3,891,694 to 3,892,125
_3249
Shewana3_3250: Shewana3_3250 - hypothetical protein (RefSeq), at 3,892,145 to 3,892,543
_3250
Shewana3_3251: Shewana3_3251 - aldehyde dehydrogenase (RefSeq), at 3,892,741 to 3,894,165
_3251
Shewana3_3252: Shewana3_3252 - TetR family transcriptional regulator (RefSeq), at 3,894,187 to 3,894,789
_3252
Shewana3_3253: Shewana3_3253 - curli production assembly/transport component CsgG (RefSeq), at 3,894,848 to 3,895,654
_3253
Position (kb)
3892
3893
3894
3895 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3891.805 kb on + strand, within Shewana3_3249 at 3891.869 kb on - strand, within Shewana3_3249 at 3891.935 kb on + strand, within Shewana3_3249 at 3892.159 kb on + strand at 3892.159 kb on + strand at 3892.182 kb on + strand at 3892.597 kb on - strand at 3893.295 kb on + strand, within Shewana3_3251 at 3893.295 kb on + strand, within Shewana3_3251 at 3893.295 kb on + strand, within Shewana3_3251 at 3893.295 kb on + strand, within Shewana3_3251 at 3893.295 kb on + strand, within Shewana3_3251 at 3893.393 kb on + strand, within Shewana3_3251 at 3893.401 kb on - strand, within Shewana3_3251 at 3893.673 kb on + strand, within Shewana3_3251 at 3894.021 kb on - strand, within Shewana3_3251 at 3894.068 kb on - strand at 3894.261 kb on - strand, within Shewana3_3252 at 3894.367 kb on - strand, within Shewana3_3252 at 3894.445 kb on + strand, within Shewana3_3252 at 3894.478 kb on - strand, within Shewana3_3252 at 3894.762 kb on + strand at 3895.005 kb on + strand, within Shewana3_3253 at 3895.043 kb on + strand, within Shewana3_3253 at 3895.051 kb on - strand, within Shewana3_3253
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,891,805 + Shewana3_3249 0.26 +2.5 3,891,869 - Shewana3_3249 0.41 +0.6 3,891,935 + Shewana3_3249 0.56 +3.5 3,892,159 + +0.6 3,892,159 + -1.9 3,892,182 + -0.1 3,892,597 - +0.1 3,893,295 + Shewana3_3251 0.39 -0.7 3,893,295 + Shewana3_3251 0.39 -1.3 3,893,295 + Shewana3_3251 0.39 -0.1 3,893,295 + Shewana3_3251 0.39 -1.8 3,893,295 + Shewana3_3251 0.39 +0.3 3,893,393 + Shewana3_3251 0.46 -0.2 3,893,401 - Shewana3_3251 0.46 -1.5 3,893,673 + Shewana3_3251 0.65 +0.1 3,894,021 - Shewana3_3251 0.90 -0.4 3,894,068 - +1.5 3,894,261 - Shewana3_3252 0.12 +1.4 3,894,367 - Shewana3_3252 0.30 -1.2 3,894,445 + Shewana3_3252 0.43 +0.2 3,894,478 - Shewana3_3252 0.48 +0.0 3,894,762 + +0.6 3,895,005 + Shewana3_3253 0.19 -0.4 3,895,043 + Shewana3_3253 0.24 +0.6 3,895,051 - Shewana3_3253 0.25 -0.8
Or see this region's nucleotide sequence