Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3228

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3227 and Shewana3_3228 are separated by 160 nucleotidesShewana3_3228 and Shewana3_3229 are separated by 397 nucleotidesShewana3_3229 and Shewana3_3230 overlap by 8 nucleotides Shewana3_3227: Shewana3_3227 - Fis family transcriptional regulator (RefSeq), at 3,869,605 to 3,871,071 _3227 Shewana3_3228: Shewana3_3228 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,871,232 to 3,872,665 _3228 Shewana3_3229: Shewana3_3229 - hypothetical protein (RefSeq), at 3,873,063 to 3,873,287 _3229 Shewana3_3230: Shewana3_3230 - methionine aminopeptidase, type I (RefSeq), at 3,873,280 to 3,874,062 _3230 Position (kb) 3871 3872 3873Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 3870.294 kb on - strand, within Shewana3_3227at 3870.325 kb on + strand, within Shewana3_3227at 3870.436 kb on - strand, within Shewana3_3227at 3870.502 kb on - strand, within Shewana3_3227at 3870.512 kb on - strand, within Shewana3_3227at 3870.650 kb on + strand, within Shewana3_3227at 3870.763 kb on + strand, within Shewana3_3227at 3870.763 kb on + strand, within Shewana3_3227at 3870.771 kb on - strand, within Shewana3_3227at 3870.941 kb on + strandat 3871.006 kb on - strandat 3871.074 kb on - strandat 3871.234 kb on + strandat 3871.242 kb on - strandat 3871.326 kb on - strandat 3871.394 kb on + strand, within Shewana3_3228at 3871.412 kb on - strand, within Shewana3_3228at 3871.593 kb on - strand, within Shewana3_3228at 3871.605 kb on - strand, within Shewana3_3228at 3871.691 kb on - strand, within Shewana3_3228at 3871.978 kb on + strand, within Shewana3_3228at 3872.107 kb on - strand, within Shewana3_3228at 3872.153 kb on + strand, within Shewana3_3228at 3872.313 kb on + strand, within Shewana3_3228at 3872.321 kb on - strand, within Shewana3_3228at 3872.321 kb on - strand, within Shewana3_3228at 3872.652 kb on + strandat 3872.661 kb on - strandat 3872.672 kb on + strandat 3872.720 kb on - strandat 3872.728 kb on + strandat 3872.767 kb on - strandat 3872.922 kb on + strandat 3872.960 kb on - strandat 3873.487 kb on - strand, within Shewana3_3230at 3873.531 kb on - strand, within Shewana3_3230

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,870,294 - Shewana3_3227 0.47 +1.5
3,870,325 + Shewana3_3227 0.49 +1.9
3,870,436 - Shewana3_3227 0.57 -0.4
3,870,502 - Shewana3_3227 0.61 +1.2
3,870,512 - Shewana3_3227 0.62 +2.0
3,870,650 + Shewana3_3227 0.71 +1.8
3,870,763 + Shewana3_3227 0.79 +0.9
3,870,763 + Shewana3_3227 0.79 +1.6
3,870,771 - Shewana3_3227 0.79 +8.7
3,870,941 + +1.7
3,871,006 - +2.8
3,871,074 - -0.2
3,871,234 + +1.6
3,871,242 - -0.5
3,871,326 - +1.8
3,871,394 + Shewana3_3228 0.11 +1.2
3,871,412 - Shewana3_3228 0.13 +1.6
3,871,593 - Shewana3_3228 0.25 +4.1
3,871,605 - Shewana3_3228 0.26 +3.5
3,871,691 - Shewana3_3228 0.32 +2.7
3,871,978 + Shewana3_3228 0.52 +2.0
3,872,107 - Shewana3_3228 0.61 +1.1
3,872,153 + Shewana3_3228 0.64 +0.2
3,872,313 + Shewana3_3228 0.75 -0.3
3,872,321 - Shewana3_3228 0.76 +1.4
3,872,321 - Shewana3_3228 0.76 +1.0
3,872,652 + +1.0
3,872,661 - +0.0
3,872,672 + -0.1
3,872,720 - +0.3
3,872,728 + +0.3
3,872,767 - -0.1
3,872,922 + -1.3
3,872,960 - -1.0
3,873,487 - Shewana3_3230 0.26 +2.2
3,873,531 - Shewana3_3230 0.32 -0.1

Or see this region's nucleotide sequence