Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3227 and Shewana3_3228 are separated by 160 nucleotides Shewana3_3228 and Shewana3_3229 are separated by 397 nucleotides Shewana3_3229 and Shewana3_3230 overlap by 8 nucleotides
Shewana3_3227: Shewana3_3227 - Fis family transcriptional regulator (RefSeq), at 3,869,605 to 3,871,071
_3227
Shewana3_3228: Shewana3_3228 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,871,232 to 3,872,665
_3228
Shewana3_3229: Shewana3_3229 - hypothetical protein (RefSeq), at 3,873,063 to 3,873,287
_3229
Shewana3_3230: Shewana3_3230 - methionine aminopeptidase, type I (RefSeq), at 3,873,280 to 3,874,062
_3230
Position (kb)
3871
3872
3873 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8 at 3870.294 kb on - strand, within Shewana3_3227 at 3870.325 kb on + strand, within Shewana3_3227 at 3870.436 kb on - strand, within Shewana3_3227 at 3870.502 kb on - strand, within Shewana3_3227 at 3870.512 kb on - strand, within Shewana3_3227 at 3870.650 kb on + strand, within Shewana3_3227 at 3870.763 kb on + strand, within Shewana3_3227 at 3870.763 kb on + strand, within Shewana3_3227 at 3870.771 kb on - strand, within Shewana3_3227 at 3870.941 kb on + strand at 3871.006 kb on - strand at 3871.074 kb on - strand at 3871.234 kb on + strand at 3871.242 kb on - strand at 3871.326 kb on - strand at 3871.394 kb on + strand, within Shewana3_3228 at 3871.412 kb on - strand, within Shewana3_3228 at 3871.593 kb on - strand, within Shewana3_3228 at 3871.605 kb on - strand, within Shewana3_3228 at 3871.691 kb on - strand, within Shewana3_3228 at 3871.978 kb on + strand, within Shewana3_3228 at 3872.107 kb on - strand, within Shewana3_3228 at 3872.153 kb on + strand, within Shewana3_3228 at 3872.313 kb on + strand, within Shewana3_3228 at 3872.321 kb on - strand, within Shewana3_3228 at 3872.321 kb on - strand, within Shewana3_3228 at 3872.652 kb on + strand at 3872.661 kb on - strand at 3872.672 kb on + strand at 3872.720 kb on - strand at 3872.728 kb on + strand at 3872.767 kb on - strand at 3872.922 kb on + strand at 3872.960 kb on - strand at 3873.487 kb on - strand, within Shewana3_3230 at 3873.531 kb on - strand, within Shewana3_3230
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,870,294 - Shewana3_3227 0.47 +1.5 3,870,325 + Shewana3_3227 0.49 +1.9 3,870,436 - Shewana3_3227 0.57 -0.4 3,870,502 - Shewana3_3227 0.61 +1.2 3,870,512 - Shewana3_3227 0.62 +2.0 3,870,650 + Shewana3_3227 0.71 +1.8 3,870,763 + Shewana3_3227 0.79 +0.9 3,870,763 + Shewana3_3227 0.79 +1.6 3,870,771 - Shewana3_3227 0.79 +8.7 3,870,941 + +1.7 3,871,006 - +2.8 3,871,074 - -0.2 3,871,234 + +1.6 3,871,242 - -0.5 3,871,326 - +1.8 3,871,394 + Shewana3_3228 0.11 +1.2 3,871,412 - Shewana3_3228 0.13 +1.6 3,871,593 - Shewana3_3228 0.25 +4.1 3,871,605 - Shewana3_3228 0.26 +3.5 3,871,691 - Shewana3_3228 0.32 +2.7 3,871,978 + Shewana3_3228 0.52 +2.0 3,872,107 - Shewana3_3228 0.61 +1.1 3,872,153 + Shewana3_3228 0.64 +0.2 3,872,313 + Shewana3_3228 0.75 -0.3 3,872,321 - Shewana3_3228 0.76 +1.4 3,872,321 - Shewana3_3228 0.76 +1.0 3,872,652 + +1.0 3,872,661 - +0.0 3,872,672 + -0.1 3,872,720 - +0.3 3,872,728 + +0.3 3,872,767 - -0.1 3,872,922 + -1.3 3,872,960 - -1.0 3,873,487 - Shewana3_3230 0.26 +2.2 3,873,531 - Shewana3_3230 0.32 -0.1
Or see this region's nucleotide sequence