Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3175 and Shewana3_3176 are separated by 14 nucleotides Shewana3_3176 and Shewana3_3177 are separated by 146 nucleotides Shewana3_3177 and Shewana3_3178 are separated by 50 nucleotides Shewana3_3178 and Shewana3_3179 are separated by 144 nucleotides
Shewana3_3175: Shewana3_3175 - pseudouridine synthase, Rsu (RefSeq), at 3,816,350 to 3,817,075
_3175
Shewana3_3176: Shewana3_3176 - transcriptional regulator (RefSeq), at 3,817,090 to 3,817,710
_3176
Shewana3_3177: Shewana3_3177 - NADPH-dependent FMN reductase (RefSeq), at 3,817,857 to 3,818,471
_3177
Shewana3_3178: Shewana3_3178 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,818,522 to 3,818,938
_3178
Shewana3_3179: Shewana3_3179 - hypothetical protein (RefSeq), at 3,819,083 to 3,819,553
_3179
Position (kb)
3817
3818
3819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3816.861 kb on + strand, within Shewana3_3175 at 3816.869 kb on - strand, within Shewana3_3175 at 3817.011 kb on + strand at 3817.077 kb on + strand at 3817.161 kb on - strand, within Shewana3_3176 at 3817.434 kb on - strand, within Shewana3_3176 at 3817.523 kb on - strand, within Shewana3_3176 at 3817.624 kb on + strand, within Shewana3_3176 at 3817.718 kb on + strand at 3817.891 kb on - strand at 3817.978 kb on + strand, within Shewana3_3177 at 3818.287 kb on - strand, within Shewana3_3177 at 3818.321 kb on + strand, within Shewana3_3177 at 3818.350 kb on + strand, within Shewana3_3177 at 3818.391 kb on + strand, within Shewana3_3177 at 3818.399 kb on - strand, within Shewana3_3177 at 3818.399 kb on - strand, within Shewana3_3177 at 3818.440 kb on - strand at 3818.529 kb on + strand at 3818.529 kb on + strand at 3818.529 kb on + strand at 3818.537 kb on - strand at 3818.749 kb on - strand, within Shewana3_3178 at 3818.779 kb on - strand, within Shewana3_3178 at 3818.870 kb on + strand, within Shewana3_3178 at 3818.878 kb on - strand, within Shewana3_3178 at 3818.947 kb on - strand at 3818.995 kb on + strand at 3818.995 kb on + strand at 3819.003 kb on - strand at 3819.142 kb on + strand, within Shewana3_3179 at 3819.152 kb on - strand, within Shewana3_3179 at 3819.209 kb on - strand, within Shewana3_3179 at 3819.270 kb on + strand, within Shewana3_3179 at 3819.289 kb on - strand, within Shewana3_3179 at 3819.371 kb on - strand, within Shewana3_3179
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,816,861 + Shewana3_3175 0.70 +0.0 3,816,869 - Shewana3_3175 0.71 -1.8 3,817,011 + -1.3 3,817,077 + -0.2 3,817,161 - Shewana3_3176 0.11 -0.2 3,817,434 - Shewana3_3176 0.55 -0.5 3,817,523 - Shewana3_3176 0.70 -1.8 3,817,624 + Shewana3_3176 0.86 +1.1 3,817,718 + -2.7 3,817,891 - -0.8 3,817,978 + Shewana3_3177 0.20 -0.8 3,818,287 - Shewana3_3177 0.70 -0.2 3,818,321 + Shewana3_3177 0.75 +0.6 3,818,350 + Shewana3_3177 0.80 +1.8 3,818,391 + Shewana3_3177 0.87 +2.0 3,818,399 - Shewana3_3177 0.88 -0.4 3,818,399 - Shewana3_3177 0.88 -1.5 3,818,440 - +0.7 3,818,529 + +0.5 3,818,529 + -0.4 3,818,529 + -0.5 3,818,537 - +0.1 3,818,749 - Shewana3_3178 0.54 +1.5 3,818,779 - Shewana3_3178 0.62 -1.4 3,818,870 + Shewana3_3178 0.83 +2.1 3,818,878 - Shewana3_3178 0.85 +0.5 3,818,947 - +1.0 3,818,995 + -1.0 3,818,995 + +1.5 3,819,003 - +0.3 3,819,142 + Shewana3_3179 0.13 +1.0 3,819,152 - Shewana3_3179 0.15 +1.6 3,819,209 - Shewana3_3179 0.27 +0.2 3,819,270 + Shewana3_3179 0.40 -1.2 3,819,289 - Shewana3_3179 0.44 -0.7 3,819,371 - Shewana3_3179 0.61 -1.8
Or see this region's nucleotide sequence