Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3156 and Shewana3_3157 are separated by 152 nucleotides Shewana3_3157 and Shewana3_3158 are separated by 50 nucleotides Shewana3_3158 and Shewana3_3159 are separated by 156 nucleotides
Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212
_3156
Shewana3_3157: Shewana3_3157 - diguanylate cyclase with GAF sensor (RefSeq), at 3,786,365 to 3,787,627
_3157
Shewana3_3158: Shewana3_3158 - hypothetical protein (RefSeq), at 3,787,678 to 3,788,295
_3158
Shewana3_3159: Shewana3_3159 - hypothetical protein (RefSeq), at 3,788,452 to 3,788,913
_3159
Position (kb)
3786
3787
3788 Strain fitness (log2 ratio)
-2
-1
0
1 at 3785.677 kb on + strand, within Shewana3_3156 at 3785.797 kb on - strand, within Shewana3_3156 at 3785.880 kb on - strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.601 kb on - strand, within Shewana3_3157 at 3786.694 kb on - strand, within Shewana3_3157 at 3786.699 kb on - strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.764 kb on - strand, within Shewana3_3157 at 3786.924 kb on - strand, within Shewana3_3157 at 3786.969 kb on + strand, within Shewana3_3157 at 3787.093 kb on + strand, within Shewana3_3157 at 3787.404 kb on + strand, within Shewana3_3157 at 3787.655 kb on - strand at 3787.738 kb on - strand at 3787.748 kb on - strand, within Shewana3_3158 at 3788.000 kb on + strand, within Shewana3_3158 at 3788.008 kb on - strand, within Shewana3_3158 at 3788.008 kb on - strand, within Shewana3_3158 at 3788.010 kb on + strand, within Shewana3_3158 at 3788.018 kb on - strand, within Shewana3_3158 at 3788.081 kb on + strand, within Shewana3_3158 at 3788.089 kb on - strand, within Shewana3_3158 at 3788.342 kb on + strand at 3788.342 kb on + strand at 3788.342 kb on + strand at 3788.350 kb on - strand at 3788.350 kb on - strand at 3788.350 kb on - strand at 3788.350 kb on - strand at 3788.356 kb on - strand at 3788.545 kb on + strand, within Shewana3_3159
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,785,677 + Shewana3_3156 0.51 -0.8 3,785,797 - Shewana3_3156 0.62 +0.6 3,785,880 - Shewana3_3156 0.70 -2.7 3,786,019 + Shewana3_3156 0.82 -0.3 3,786,019 + Shewana3_3156 0.82 -0.7 3,786,027 - Shewana3_3156 0.83 +0.2 3,786,027 - Shewana3_3156 0.83 -1.7 3,786,601 - Shewana3_3157 0.19 -0.7 3,786,694 - Shewana3_3157 0.26 +0.2 3,786,699 - Shewana3_3157 0.26 +1.4 3,786,756 + Shewana3_3157 0.31 -0.3 3,786,756 + Shewana3_3157 0.31 -0.9 3,786,764 - Shewana3_3157 0.32 +1.1 3,786,924 - Shewana3_3157 0.44 -0.4 3,786,969 + Shewana3_3157 0.48 -0.6 3,787,093 + Shewana3_3157 0.58 +0.0 3,787,404 + Shewana3_3157 0.82 -0.7 3,787,655 - +0.4 3,787,738 - -0.1 3,787,748 - Shewana3_3158 0.11 -0.9 3,788,000 + Shewana3_3158 0.52 -1.0 3,788,008 - Shewana3_3158 0.53 -0.6 3,788,008 - Shewana3_3158 0.53 +0.5 3,788,010 + Shewana3_3158 0.54 -0.7 3,788,018 - Shewana3_3158 0.55 -1.7 3,788,081 + Shewana3_3158 0.65 +1.2 3,788,089 - Shewana3_3158 0.67 +1.7 3,788,342 + +0.8 3,788,342 + +0.3 3,788,342 + -0.6 3,788,350 - -0.9 3,788,350 - -1.3 3,788,350 - +0.1 3,788,350 - +0.2 3,788,356 - -0.0 3,788,545 + Shewana3_3159 0.20 +0.8
Or see this region's nucleotide sequence