Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3117

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3116 and Shewana3_3117 overlap by 1 nucleotidesShewana3_3117 and Shewana3_3118 are separated by 488 nucleotides Shewana3_3116: Shewana3_3116 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,738,758 to 3,740,245 _3116 Shewana3_3117: Shewana3_3117 - hypothetical protein (RefSeq), at 3,740,245 to 3,741,234 _3117 Shewana3_3118: Shewana3_3118 - hypothetical protein (RefSeq), at 3,741,723 to 3,742,625 _3118 Position (kb) 3740 3741 3742Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3739.373 kb on - strand, within Shewana3_3116at 3739.405 kb on - strand, within Shewana3_3116at 3739.502 kb on - strand, within Shewana3_3116at 3739.548 kb on + strand, within Shewana3_3116at 3739.736 kb on - strand, within Shewana3_3116at 3739.736 kb on - strand, within Shewana3_3116at 3739.736 kb on - strand, within Shewana3_3116at 3739.860 kb on + strand, within Shewana3_3116at 3739.868 kb on - strand, within Shewana3_3116at 3740.179 kb on - strandat 3740.349 kb on + strand, within Shewana3_3117at 3740.357 kb on - strand, within Shewana3_3117at 3740.551 kb on - strand, within Shewana3_3117at 3740.820 kb on - strand, within Shewana3_3117at 3740.958 kb on + strand, within Shewana3_3117at 3740.966 kb on - strand, within Shewana3_3117at 3741.139 kb on - strandat 3741.231 kb on + strandat 3741.476 kb on + strandat 3741.922 kb on + strand, within Shewana3_3118at 3741.961 kb on + strand, within Shewana3_3118at 3742.123 kb on + strand, within Shewana3_3118at 3742.159 kb on - strand, within Shewana3_3118

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,739,373 - Shewana3_3116 0.41 -0.3
3,739,405 - Shewana3_3116 0.43 +1.0
3,739,502 - Shewana3_3116 0.50 -0.9
3,739,548 + Shewana3_3116 0.53 +0.5
3,739,736 - Shewana3_3116 0.66 +0.6
3,739,736 - Shewana3_3116 0.66 +2.7
3,739,736 - Shewana3_3116 0.66 +0.8
3,739,860 + Shewana3_3116 0.74 -1.0
3,739,868 - Shewana3_3116 0.75 +0.7
3,740,179 - +0.1
3,740,349 + Shewana3_3117 0.11 -0.2
3,740,357 - Shewana3_3117 0.11 -0.3
3,740,551 - Shewana3_3117 0.31 -0.5
3,740,820 - Shewana3_3117 0.58 +1.1
3,740,958 + Shewana3_3117 0.72 -1.8
3,740,966 - Shewana3_3117 0.73 +6.3
3,741,139 - -1.3
3,741,231 + -0.1
3,741,476 + +1.3
3,741,922 + Shewana3_3118 0.22 -0.1
3,741,961 + Shewana3_3118 0.26 -0.4
3,742,123 + Shewana3_3118 0.44 -0.2
3,742,159 - Shewana3_3118 0.48 -0.8

Or see this region's nucleotide sequence