Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3117
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,739,373 | - | Shewana3_3116 | 0.41 | -0.3 | |
3,739,405 | - | Shewana3_3116 | 0.43 | +1.0 | |
3,739,502 | - | Shewana3_3116 | 0.50 | -0.9 | |
3,739,548 | + | Shewana3_3116 | 0.53 | +0.5 | |
3,739,736 | - | Shewana3_3116 | 0.66 | +0.6 | |
3,739,736 | - | Shewana3_3116 | 0.66 | +2.7 | |
3,739,736 | - | Shewana3_3116 | 0.66 | +0.8 | |
3,739,860 | + | Shewana3_3116 | 0.74 | -1.0 | |
3,739,868 | - | Shewana3_3116 | 0.75 | +0.7 | |
3,740,179 | - | +0.1 | |||
3,740,349 | + | Shewana3_3117 | 0.11 | -0.2 | |
3,740,357 | - | Shewana3_3117 | 0.11 | -0.3 | |
3,740,551 | - | Shewana3_3117 | 0.31 | -0.5 | |
3,740,820 | - | Shewana3_3117 | 0.58 | +1.1 | |
3,740,958 | + | Shewana3_3117 | 0.72 | -1.8 | |
3,740,966 | - | Shewana3_3117 | 0.73 | +6.3 | |
3,741,139 | - | -1.3 | |||
3,741,231 | + | -0.1 | |||
3,741,476 | + | +1.3 | |||
3,741,922 | + | Shewana3_3118 | 0.22 | -0.1 | |
3,741,961 | + | Shewana3_3118 | 0.26 | -0.4 | |
3,742,123 | + | Shewana3_3118 | 0.44 | -0.2 | |
3,742,159 | - | Shewana3_3118 | 0.48 | -0.8 |
Or see this region's nucleotide sequence