Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3113 and Shewana3_3114 are separated by 58 nucleotides Shewana3_3114 and Shewana3_3115 are separated by 224 nucleotides
Shewana3_3113: Shewana3_3113 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) , at 3,733,732 to 3,734,730
_3113
Shewana3_3114: Shewana3_3114 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data) , at 3,734,789 to 3,735,697
_3114
Shewana3_3115: Shewana3_3115 - beta-N-acetylhexosaminidase (RefSeq), at 3,735,922 to 3,738,729
_3115
Position (kb)
3734
3735
3736 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3733.893 kb on - strand, within Shewana3_3113 at 3733.937 kb on + strand, within Shewana3_3113 at 3733.937 kb on + strand, within Shewana3_3113 at 3734.010 kb on + strand, within Shewana3_3113 at 3734.031 kb on - strand, within Shewana3_3113 at 3734.031 kb on - strand, within Shewana3_3113 at 3734.092 kb on + strand, within Shewana3_3113 at 3734.283 kb on - strand, within Shewana3_3113 at 3734.831 kb on + strand at 3735.107 kb on + strand, within Shewana3_3114 at 3735.223 kb on - strand, within Shewana3_3114 at 3735.244 kb on + strand, within Shewana3_3114 at 3735.275 kb on + strand, within Shewana3_3114 at 3735.455 kb on + strand, within Shewana3_3114 at 3735.455 kb on + strand, within Shewana3_3114 at 3735.457 kb on - strand, within Shewana3_3114 at 3735.463 kb on - strand, within Shewana3_3114 at 3735.978 kb on + strand at 3735.986 kb on - strand at 3735.986 kb on - strand at 3736.024 kb on - strand at 3736.024 kb on - strand at 3736.083 kb on - strand at 3736.370 kb on + strand, within Shewana3_3115 at 3736.378 kb on - strand, within Shewana3_3115 at 3736.378 kb on - strand, within Shewana3_3115 at 3736.451 kb on + strand, within Shewana3_3115 at 3736.453 kb on - strand, within Shewana3_3115 at 3736.498 kb on - strand, within Shewana3_3115 at 3736.505 kb on - strand, within Shewana3_3115 at 3736.532 kb on - strand, within Shewana3_3115 at 3736.578 kb on - strand, within Shewana3_3115 at 3736.584 kb on + strand, within Shewana3_3115 at 3736.611 kb on - strand, within Shewana3_3115 at 3736.623 kb on - strand, within Shewana3_3115 at 3736.631 kb on - strand, within Shewana3_3115 at 3736.646 kb on + strand, within Shewana3_3115 at 3736.678 kb on + strand, within Shewana3_3115 at 3736.678 kb on + strand, within Shewana3_3115
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,733,893 - Shewana3_3113 0.16 +0.5 3,733,937 + Shewana3_3113 0.21 -0.1 3,733,937 + Shewana3_3113 0.21 -1.0 3,734,010 + Shewana3_3113 0.28 +0.0 3,734,031 - Shewana3_3113 0.30 +0.5 3,734,031 - Shewana3_3113 0.30 +0.3 3,734,092 + Shewana3_3113 0.36 -0.2 3,734,283 - Shewana3_3113 0.55 -0.8 3,734,831 + +0.9 3,735,107 + Shewana3_3114 0.35 -0.0 3,735,223 - Shewana3_3114 0.48 +0.2 3,735,244 + Shewana3_3114 0.50 -0.4 3,735,275 + Shewana3_3114 0.53 +0.8 3,735,455 + Shewana3_3114 0.73 -0.1 3,735,455 + Shewana3_3114 0.73 +0.8 3,735,457 - Shewana3_3114 0.73 -1.5 3,735,463 - Shewana3_3114 0.74 -0.2 3,735,978 + +0.1 3,735,986 - -1.1 3,735,986 - +3.7 3,736,024 - +0.1 3,736,024 - +0.6 3,736,083 - -1.2 3,736,370 + Shewana3_3115 0.16 +0.3 3,736,378 - Shewana3_3115 0.16 +1.0 3,736,378 - Shewana3_3115 0.16 -0.1 3,736,451 + Shewana3_3115 0.19 -1.1 3,736,453 - Shewana3_3115 0.19 +0.7 3,736,498 - Shewana3_3115 0.21 -0.1 3,736,505 - Shewana3_3115 0.21 -0.6 3,736,532 - Shewana3_3115 0.22 -0.3 3,736,578 - Shewana3_3115 0.23 -0.7 3,736,584 + Shewana3_3115 0.24 -0.2 3,736,611 - Shewana3_3115 0.25 +0.1 3,736,623 - Shewana3_3115 0.25 -0.9 3,736,631 - Shewana3_3115 0.25 +0.3 3,736,646 + Shewana3_3115 0.26 +1.9 3,736,678 + Shewana3_3115 0.27 +0.4 3,736,678 + Shewana3_3115 0.27 +1.1
Or see this region's nucleotide sequence