Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3101 and Shewana3_3102 are separated by 44 nucleotides Shewana3_3102 and Shewana3_3103 are separated by 85 nucleotides
Shewana3_3101: Shewana3_3101 - FAD dependent oxidoreductase (RefSeq), at 3,720,060 to 3,721,367
_3101
Shewana3_3102: Shewana3_3102 - hypothetical protein (RefSeq), at 3,721,412 to 3,721,924
_3102
Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867
_3103
Position (kb)
3721
3722 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 3720.937 kb on + strand, within Shewana3_3101 at 3721.180 kb on + strand, within Shewana3_3101 at 3721.183 kb on - strand, within Shewana3_3101 at 3721.361 kb on + strand at 3721.406 kb on - strand at 3721.459 kb on + strand at 3721.546 kb on + strand, within Shewana3_3102 at 3721.590 kb on + strand, within Shewana3_3102 at 3721.707 kb on + strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.942 kb on + strand at 3721.948 kb on + strand at 3722.274 kb on - strand, within Shewana3_3103 at 3722.284 kb on - strand, within Shewana3_3103 at 3722.484 kb on + strand, within Shewana3_3103 at 3722.492 kb on - strand, within Shewana3_3103 at 3722.644 kb on + strand, within Shewana3_3103 at 3722.662 kb on - strand, within Shewana3_3103 at 3722.747 kb on + strand, within Shewana3_3103 at 3722.786 kb on - strand at 3722.830 kb on + strand at 3722.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,720,937 + Shewana3_3101 0.67 +1.8 3,721,180 + Shewana3_3101 0.86 -1.3 3,721,183 - Shewana3_3101 0.86 -1.8 3,721,361 + +0.9 3,721,406 - -0.6 3,721,459 + -0.9 3,721,546 + Shewana3_3102 0.26 -0.5 3,721,590 + Shewana3_3102 0.35 -0.3 3,721,707 + Shewana3_3102 0.58 -0.1 3,721,823 - Shewana3_3102 0.80 -0.8 3,721,823 - Shewana3_3102 0.80 -0.4 3,721,942 + +0.5 3,721,948 + -0.1 3,722,274 - Shewana3_3103 0.31 +0.8 3,722,284 - Shewana3_3103 0.32 +7.9 3,722,484 + Shewana3_3103 0.55 +0.2 3,722,492 - Shewana3_3103 0.56 -0.4 3,722,644 + Shewana3_3103 0.74 +1.2 3,722,662 - Shewana3_3103 0.76 -0.1 3,722,747 + Shewana3_3103 0.86 +0.4 3,722,786 - +0.0 3,722,830 + -0.4 3,722,848 - -1.6
Or see this region's nucleotide sequence