Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3091 and Shewana3_3092 are separated by 102 nucleotides Shewana3_3092 and Shewana3_3093 are separated by 56 nucleotides
Shewana3_3091: Shewana3_3091 - 4-aminobutyrate aminotransferase (RefSeq), at 3,707,576 to 3,708,853
_3091
Shewana3_3092: Shewana3_3092 - succinate semialdehyde dehydrogenase (RefSeq), at 3,708,956 to 3,710,404
_3092
Shewana3_3093: Shewana3_3093 - FAD dependent oxidoreductase (RefSeq), at 3,710,461 to 3,711,747
_3093
Position (kb)
3708
3709
3710
3711 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3708.221 kb on + strand, within Shewana3_3091 at 3708.231 kb on + strand, within Shewana3_3091 at 3708.474 kb on + strand, within Shewana3_3091 at 3708.687 kb on + strand, within Shewana3_3091 at 3708.687 kb on + strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.780 kb on + strand at 3708.859 kb on - strand at 3709.088 kb on - strand at 3709.217 kb on - strand, within Shewana3_3092 at 3709.461 kb on - strand, within Shewana3_3092 at 3709.473 kb on + strand, within Shewana3_3092 at 3709.510 kb on + strand, within Shewana3_3092 at 3709.787 kb on + strand, within Shewana3_3092 at 3709.833 kb on - strand, within Shewana3_3092 at 3709.863 kb on + strand, within Shewana3_3092 at 3710.111 kb on - strand, within Shewana3_3092 at 3710.113 kb on + strand, within Shewana3_3092 at 3710.121 kb on - strand, within Shewana3_3092 at 3710.187 kb on - strand, within Shewana3_3092 at 3710.629 kb on + strand, within Shewana3_3093 at 3710.737 kb on + strand, within Shewana3_3093 at 3710.755 kb on - strand, within Shewana3_3093 at 3710.872 kb on - strand, within Shewana3_3093 at 3711.070 kb on + strand, within Shewana3_3093 at 3711.070 kb on + strand, within Shewana3_3093 at 3711.072 kb on + strand, within Shewana3_3093 at 3711.102 kb on - strand, within Shewana3_3093 at 3711.174 kb on - strand, within Shewana3_3093 at 3711.287 kb on - strand, within Shewana3_3093
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,708,221 + Shewana3_3091 0.50 +1.8 3,708,231 + Shewana3_3091 0.51 +0.6 3,708,474 + Shewana3_3091 0.70 -2.4 3,708,687 + Shewana3_3091 0.87 +0.0 3,708,687 + Shewana3_3091 0.87 -0.5 3,708,695 - Shewana3_3091 0.88 +0.3 3,708,695 - Shewana3_3091 0.88 -0.5 3,708,695 - Shewana3_3091 0.88 -0.6 3,708,695 - Shewana3_3091 0.88 -1.8 3,708,780 + -0.4 3,708,859 - -0.1 3,709,088 - -0.5 3,709,217 - Shewana3_3092 0.18 -1.3 3,709,461 - Shewana3_3092 0.35 -1.4 3,709,473 + Shewana3_3092 0.36 -0.2 3,709,510 + Shewana3_3092 0.38 -0.7 3,709,787 + Shewana3_3092 0.57 +0.2 3,709,833 - Shewana3_3092 0.61 +0.7 3,709,863 + Shewana3_3092 0.63 -2.1 3,710,111 - Shewana3_3092 0.80 +0.7 3,710,113 + Shewana3_3092 0.80 -1.3 3,710,121 - Shewana3_3092 0.80 -0.9 3,710,187 - Shewana3_3092 0.85 +6.4 3,710,629 + Shewana3_3093 0.13 -0.5 3,710,737 + Shewana3_3093 0.21 +1.8 3,710,755 - Shewana3_3093 0.23 +1.4 3,710,872 - Shewana3_3093 0.32 -0.8 3,711,070 + Shewana3_3093 0.47 +1.0 3,711,070 + Shewana3_3093 0.47 +7.2 3,711,072 + Shewana3_3093 0.47 +0.5 3,711,102 - Shewana3_3093 0.50 -0.8 3,711,174 - Shewana3_3093 0.55 +0.8 3,711,287 - Shewana3_3093 0.64 -1.1
Or see this region's nucleotide sequence