Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3089 and Shewana3_3090 are separated by 370 nucleotides Shewana3_3090 and Shewana3_3091 are separated by 52 nucleotides
Shewana3_3089: Shewana3_3089 - amino acid/peptide transporter (RefSeq), at 3,704,553 to 3,706,103
_3089
Shewana3_3090: Shewana3_3090 - luciferase family protein (RefSeq), at 3,706,474 to 3,707,523
_3090
Shewana3_3091: Shewana3_3091 - 4-aminobutyrate aminotransferase (RefSeq), at 3,707,576 to 3,708,853
_3091
Position (kb)
3706
3707
3708 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3705.532 kb on - strand, within Shewana3_3089 at 3705.820 kb on + strand, within Shewana3_3089 at 3705.900 kb on + strand, within Shewana3_3089 at 3705.900 kb on + strand, within Shewana3_3089 at 3706.120 kb on + strand at 3706.253 kb on - strand at 3706.303 kb on + strand at 3706.362 kb on + strand at 3706.367 kb on + strand at 3706.443 kb on + strand at 3706.641 kb on - strand, within Shewana3_3090 at 3706.774 kb on - strand, within Shewana3_3090 at 3706.860 kb on - strand, within Shewana3_3090 at 3707.183 kb on - strand, within Shewana3_3090 at 3707.254 kb on - strand, within Shewana3_3090 at 3707.254 kb on - strand, within Shewana3_3090 at 3707.284 kb on - strand, within Shewana3_3090 at 3707.669 kb on - strand at 3707.802 kb on - strand, within Shewana3_3091 at 3707.937 kb on - strand, within Shewana3_3091 at 3708.221 kb on + strand, within Shewana3_3091 at 3708.231 kb on + strand, within Shewana3_3091 at 3708.474 kb on + strand, within Shewana3_3091
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,705,532 - Shewana3_3089 0.63 +3.4 3,705,820 + Shewana3_3089 0.82 -0.5 3,705,900 + Shewana3_3089 0.87 -1.7 3,705,900 + Shewana3_3089 0.87 -1.9 3,706,120 + -0.5 3,706,253 - +0.7 3,706,303 + -1.1 3,706,362 + +0.8 3,706,367 + -0.2 3,706,443 + -0.6 3,706,641 - Shewana3_3090 0.16 -0.1 3,706,774 - Shewana3_3090 0.29 -1.2 3,706,860 - Shewana3_3090 0.37 -1.0 3,707,183 - Shewana3_3090 0.68 -0.7 3,707,254 - Shewana3_3090 0.74 -0.1 3,707,254 - Shewana3_3090 0.74 -2.2 3,707,284 - Shewana3_3090 0.77 -0.4 3,707,669 - +0.6 3,707,802 - Shewana3_3091 0.18 -0.3 3,707,937 - Shewana3_3091 0.28 -0.1 3,708,221 + Shewana3_3091 0.50 +1.8 3,708,231 + Shewana3_3091 0.51 +0.6 3,708,474 + Shewana3_3091 0.70 -2.4
Or see this region's nucleotide sequence