Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3070 and Shewana3_3071 are separated by 27 nucleotides Shewana3_3071 and Shewana3_3072 are separated by 86 nucleotides Shewana3_3072 and Shewana3_3073 are separated by 470 nucleotides
Shewana3_3070: Shewana3_3070 - aspartate carbamoyltransferase (RefSeq), at 3,682,211 to 3,683,230
_3070
Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550
_3071
Shewana3_3072: Shewana3_3072 - hypothetical protein (RefSeq), at 3,684,637 to 3,684,834
_3072
Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615
_3073
Position (kb) 3683
3684
3685 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 3682.334 kb on - strand, within Shewana3_3070 at 3682.379 kb on + strand, within Shewana3_3070 at 3682.394 kb on + strand, within Shewana3_3070 at 3682.576 kb on - strand, within Shewana3_3070 at 3682.658 kb on + strand, within Shewana3_3070 at 3682.809 kb on + strand, within Shewana3_3070 at 3683.020 kb on + strand, within Shewana3_3070 at 3683.063 kb on + strand, within Shewana3_3070 at 3684.557 kb on + strand at 3684.732 kb on + strand, within Shewana3_3072 at 3685.280 kb on - strand at 3685.501 kb on - strand, within Shewana3_3073
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,682,334 - Shewana3_3070 0.12 +0.8 3,682,379 + Shewana3_3070 0.16 -0.0 3,682,394 + Shewana3_3070 0.18 -0.1 3,682,576 - Shewana3_3070 0.36 -1.2 3,682,658 + Shewana3_3070 0.44 +0.2 3,682,809 + Shewana3_3070 0.59 -1.4 3,683,020 + Shewana3_3070 0.79 +0.1 3,683,063 + Shewana3_3070 0.84 -1.0 3,684,557 + +0.7 3,684,732 + Shewana3_3072 0.48 +3.4 3,685,280 - +4.3 3,685,501 - Shewana3_3073 0.15 +0.0
Or see this region's nucleotide sequence