Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3053 and Shewana3_3054 are separated by 55 nucleotides Shewana3_3054 and Shewana3_3055 overlap by 4 nucleotides Shewana3_3055 and Shewana3_3056 are separated by 1 nucleotides Shewana3_3056 and Shewana3_3057 are separated by 122 nucleotides
Shewana3_3053: Shewana3_3053 - cobalamin biosynthesis protein CbiB (RefSeq), at 3,661,068 to 3,662,057
_3053
Shewana3_3054: Shewana3_3054 - hypothetical protein (RefSeq), at 3,662,113 to 3,662,490
_3054
Shewana3_3055: Shewana3_3055 - hypothetical protein (RefSeq), at 3,662,487 to 3,663,113
_3055
Shewana3_3056: Shewana3_3056 - hypothetical protein (RefSeq), at 3,663,115 to 3,663,606
_3056
Shewana3_3057: Shewana3_3057 - hypothetical protein (RefSeq), at 3,663,729 to 3,664,157
_3057
Position (kb)
3662
3663
3664 Strain fitness (log2 ratio)
-2
-1
0
1 at 3661.611 kb on - strand, within Shewana3_3053 at 3661.878 kb on + strand, within Shewana3_3053 at 3661.908 kb on - strand, within Shewana3_3053 at 3661.918 kb on - strand, within Shewana3_3053 at 3662.042 kb on + strand at 3662.211 kb on - strand, within Shewana3_3054 at 3662.220 kb on + strand, within Shewana3_3054 at 3662.313 kb on - strand, within Shewana3_3054 at 3662.315 kb on + strand, within Shewana3_3054 at 3662.714 kb on - strand, within Shewana3_3055 at 3662.770 kb on - strand, within Shewana3_3055 at 3662.872 kb on - strand, within Shewana3_3055 at 3662.889 kb on + strand, within Shewana3_3055 at 3662.922 kb on + strand, within Shewana3_3055 at 3663.140 kb on + strand at 3663.188 kb on - strand, within Shewana3_3056 at 3663.254 kb on + strand, within Shewana3_3056 at 3663.444 kb on + strand, within Shewana3_3056 at 3663.500 kb on + strand, within Shewana3_3056 at 3663.515 kb on + strand, within Shewana3_3056 at 3663.589 kb on - strand at 3663.769 kb on + strand at 3663.931 kb on + strand, within Shewana3_3057 at 3664.052 kb on - strand, within Shewana3_3057
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,661,611 - Shewana3_3053 0.55 -2.0 3,661,878 + Shewana3_3053 0.82 -1.3 3,661,908 - Shewana3_3053 0.85 -0.3 3,661,918 - Shewana3_3053 0.86 -0.7 3,662,042 + -0.8 3,662,211 - Shewana3_3054 0.26 -0.5 3,662,220 + Shewana3_3054 0.28 +0.3 3,662,313 - Shewana3_3054 0.53 -1.0 3,662,315 + Shewana3_3054 0.53 -0.3 3,662,714 - Shewana3_3055 0.36 +0.2 3,662,770 - Shewana3_3055 0.45 -0.4 3,662,872 - Shewana3_3055 0.61 +1.2 3,662,889 + Shewana3_3055 0.64 -0.5 3,662,922 + Shewana3_3055 0.69 +0.1 3,663,140 + +0.5 3,663,188 - Shewana3_3056 0.15 +0.5 3,663,254 + Shewana3_3056 0.28 +0.8 3,663,444 + Shewana3_3056 0.67 -1.7 3,663,500 + Shewana3_3056 0.78 -0.4 3,663,515 + Shewana3_3056 0.81 +0.5 3,663,589 - -0.0 3,663,769 + -1.4 3,663,931 + Shewana3_3057 0.47 -1.9 3,664,052 - Shewana3_3057 0.75 +1.3
Or see this region's nucleotide sequence