Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thyA and Shewana3_3040 overlap by 1 nucleotides Shewana3_3040 and Shewana3_3041 are separated by 45 nucleotides Shewana3_3041 and Shewana3_3042 are separated by 58 nucleotides
Shewana3_3039: thyA - thymidylate synthase (RefSeq), at 3,643,150 to 3,643,944
thyA
Shewana3_3040: Shewana3_3040 - prolipoprotein diacylglyceryl transferase (RefSeq), at 3,643,944 to 3,644,750
_3040
Shewana3_3041: Shewana3_3041 - hypothetical protein (RefSeq), at 3,644,796 to 3,645,596
_3041
Shewana3_3042: Shewana3_3042 - phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq), at 3,645,655 to 3,647,889
_3042
Position (kb)
3644
3645
3646 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3644.863 kb on - strand at 3644.874 kb on - strand at 3644.959 kb on - strand, within Shewana3_3041 at 3645.003 kb on - strand, within Shewana3_3041 at 3645.010 kb on - strand, within Shewana3_3041 at 3645.263 kb on - strand, within Shewana3_3041 at 3645.463 kb on - strand, within Shewana3_3041 at 3645.478 kb on + strand, within Shewana3_3041 at 3645.486 kb on - strand, within Shewana3_3041 at 3645.600 kb on + strand at 3645.600 kb on + strand at 3645.600 kb on + strand at 3645.608 kb on - strand at 3645.633 kb on - strand at 3645.682 kb on - strand at 3645.740 kb on - strand at 3645.742 kb on - strand at 3645.934 kb on - strand, within Shewana3_3042 at 3646.120 kb on - strand, within Shewana3_3042 at 3646.154 kb on - strand, within Shewana3_3042 at 3646.173 kb on + strand, within Shewana3_3042 at 3646.173 kb on + strand, within Shewana3_3042 at 3646.181 kb on - strand, within Shewana3_3042 at 3646.181 kb on - strand, within Shewana3_3042 at 3646.197 kb on - strand, within Shewana3_3042 at 3646.235 kb on - strand, within Shewana3_3042 at 3646.240 kb on - strand, within Shewana3_3042 at 3646.293 kb on + strand, within Shewana3_3042 at 3646.341 kb on + strand, within Shewana3_3042 at 3646.369 kb on - strand, within Shewana3_3042 at 3646.389 kb on + strand, within Shewana3_3042 at 3646.415 kb on - strand, within Shewana3_3042 at 3646.415 kb on - strand, within Shewana3_3042 at 3646.418 kb on + strand, within Shewana3_3042 at 3646.448 kb on + strand, within Shewana3_3042 at 3646.561 kb on + strand, within Shewana3_3042
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,644,863 - -1.9 3,644,874 - -0.9 3,644,959 - Shewana3_3041 0.20 -0.4 3,645,003 - Shewana3_3041 0.26 -0.4 3,645,010 - Shewana3_3041 0.27 +0.2 3,645,263 - Shewana3_3041 0.58 -0.3 3,645,463 - Shewana3_3041 0.83 -1.2 3,645,478 + Shewana3_3041 0.85 +2.7 3,645,486 - Shewana3_3041 0.86 -0.4 3,645,600 + +1.3 3,645,600 + +0.5 3,645,600 + -0.8 3,645,608 - -0.7 3,645,633 - -1.0 3,645,682 - -0.3 3,645,740 - -0.1 3,645,742 - -0.0 3,645,934 - Shewana3_3042 0.12 -0.2 3,646,120 - Shewana3_3042 0.21 -0.0 3,646,154 - Shewana3_3042 0.22 -0.9 3,646,173 + Shewana3_3042 0.23 -1.3 3,646,173 + Shewana3_3042 0.23 -1.8 3,646,181 - Shewana3_3042 0.24 -0.7 3,646,181 - Shewana3_3042 0.24 -1.5 3,646,197 - Shewana3_3042 0.24 -0.3 3,646,235 - Shewana3_3042 0.26 +0.1 3,646,240 - Shewana3_3042 0.26 -0.7 3,646,293 + Shewana3_3042 0.29 +3.3 3,646,341 + Shewana3_3042 0.31 +1.3 3,646,369 - Shewana3_3042 0.32 -0.4 3,646,389 + Shewana3_3042 0.33 +1.0 3,646,415 - Shewana3_3042 0.34 +0.3 3,646,415 - Shewana3_3042 0.34 -0.8 3,646,418 + Shewana3_3042 0.34 -2.1 3,646,448 + Shewana3_3042 0.35 +1.3 3,646,561 + Shewana3_3042 0.41 +1.3
Or see this region's nucleotide sequence