Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3038

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnhaR and Shewana3_3037 are separated by 95 nucleotidesShewana3_3037 and Shewana3_3038 are separated by 2 nucleotidesShewana3_3038 and thyA are separated by 118 nucleotidesthyA and Shewana3_3040 overlap by 1 nucleotides Shewana3_3036: nhaR - transcriptional activator NhaR (RefSeq), at 3,640,469 to 3,641,377 nhaR Shewana3_3037: Shewana3_3037 - hypothetical protein (RefSeq), at 3,641,473 to 3,641,859 _3037 Shewana3_3038: Shewana3_3038 - Na+/H+ antiporter NhaA (RefSeq), at 3,641,862 to 3,643,031 _3038 Shewana3_3039: thyA - thymidylate synthase (RefSeq), at 3,643,150 to 3,643,944 thyA Shewana3_3040: Shewana3_3040 - prolipoprotein diacylglyceryl transferase (RefSeq), at 3,643,944 to 3,644,750 _3040 Position (kb) 3641 3642 3643 3644Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 3640.865 kb on + strand, within nhaRat 3641.137 kb on + strand, within nhaRat 3641.276 kb on + strand, within nhaRat 3641.290 kb on + strandat 3641.298 kb on - strandat 3641.305 kb on - strandat 3641.411 kb on + strandat 3641.421 kb on + strandat 3641.428 kb on + strandat 3641.647 kb on + strand, within Shewana3_3037at 3641.665 kb on - strand, within Shewana3_3037at 3641.665 kb on - strand, within Shewana3_3037at 3641.929 kb on - strandat 3641.961 kb on + strandat 3642.180 kb on - strand, within Shewana3_3038at 3642.264 kb on + strand, within Shewana3_3038at 3642.369 kb on + strand, within Shewana3_3038at 3642.375 kb on - strand, within Shewana3_3038at 3642.438 kb on + strand, within Shewana3_3038at 3642.446 kb on - strand, within Shewana3_3038at 3642.446 kb on - strand, within Shewana3_3038at 3642.775 kb on + strand, within Shewana3_3038at 3642.836 kb on - strand, within Shewana3_3038at 3642.853 kb on + strand, within Shewana3_3038

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,640,865 + nhaR Shewana3_3036 0.44 -0.3
3,641,137 + nhaR Shewana3_3036 0.73 -0.9
3,641,276 + nhaR Shewana3_3036 0.89 -0.9
3,641,290 + -0.3
3,641,298 - +1.2
3,641,305 - -0.6
3,641,411 + -0.5
3,641,421 + +0.1
3,641,428 + -0.6
3,641,647 + Shewana3_3037 0.45 +2.3
3,641,665 - Shewana3_3037 0.50 +5.2
3,641,665 - Shewana3_3037 0.50 +0.0
3,641,929 - -2.1
3,641,961 + +2.3
3,642,180 - Shewana3_3038 0.27 +0.8
3,642,264 + Shewana3_3038 0.34 +1.3
3,642,369 + Shewana3_3038 0.43 +0.0
3,642,375 - Shewana3_3038 0.44 -1.9
3,642,438 + Shewana3_3038 0.49 -2.5
3,642,446 - Shewana3_3038 0.50 +0.0
3,642,446 - Shewana3_3038 0.50 -0.2
3,642,775 + Shewana3_3038 0.78 +9.8
3,642,836 - Shewana3_3038 0.83 +1.3
3,642,853 + Shewana3_3038 0.85 +0.0

Or see this region's nucleotide sequence