Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2988
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,592,409 | + | Shewana3_2987 | 0.74 | -0.0 | |
3,592,578 | - | Shewana3_2987 | 0.85 | -0.2 | |
3,592,660 | - | Shewana3_2987 | 0.90 | +0.6 | |
3,592,667 | + | -0.8 | |||
3,592,716 | - | -0.4 | |||
3,592,803 | - | -0.4 | |||
3,592,808 | + | +0.3 | |||
3,593,060 | + | -0.4 | |||
3,593,068 | - | +3.2 | |||
3,593,068 | - | +3.6 | |||
3,593,253 | - | +4.3 | |||
3,593,394 | + | Shewana3_2988 | 0.17 | +3.0 | |
3,593,652 | - | Shewana3_2988 | 0.37 | +2.5 | |
3,593,897 | + | Shewana3_2988 | 0.56 | +2.4 | |
3,593,935 | + | Shewana3_2988 | 0.59 | +4.3 | |
3,594,428 | + | -0.1 | |||
3,594,447 | - | +1.8 | |||
3,594,518 | + | +2.3 | |||
3,594,708 | - | Shewana3_2989 | 0.12 | +0.2 | |
3,594,730 | - | Shewana3_2989 | 0.14 | +0.9 | |
3,595,063 | - | Shewana3_2989 | 0.40 | -0.5 | |
3,595,105 | - | Shewana3_2989 | 0.43 | -0.0 | |
3,595,150 | - | Shewana3_2989 | 0.46 | -0.6 | |
3,595,150 | - | Shewana3_2989 | 0.46 | -0.4 | |
3,595,195 | - | Shewana3_2989 | 0.50 | +0.6 | |
3,595,233 | - | Shewana3_2989 | 0.53 | -0.2 | |
3,595,249 | + | Shewana3_2989 | 0.54 | -0.3 | |
3,595,415 | - | Shewana3_2989 | 0.67 | -0.8 |
Or see this region's nucleotide sequence