Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2976
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,577,622 | + | +1.8 | |||
3,577,636 | + | +1.6 | |||
3,577,644 | - | -1.0 | |||
3,577,738 | - | Shewana3_2976 | 0.14 | -1.1 | |
3,577,827 | + | Shewana3_2976 | 0.32 | +0.4 | |
3,577,834 | + | Shewana3_2976 | 0.34 | -0.6 | |
3,577,839 | - | Shewana3_2976 | 0.35 | -0.3 | |
3,578,009 | - | Shewana3_2976 | 0.69 | -0.4 | |
3,578,079 | - | Shewana3_2976 | 0.83 | -0.3 | |
3,578,256 | + | +1.1 | |||
3,578,256 | + | +1.1 | |||
3,578,316 | - | -0.7 | |||
3,578,501 | - | Shewana3_2977 | 0.51 | -0.6 | |
3,578,577 | + | Shewana3_2977 | 0.69 | -0.2 | |
3,578,608 | - | Shewana3_2977 | 0.76 | +0.1 | |
3,578,620 | + | Shewana3_2977 | 0.79 | -1.5 | |
3,578,621 | - | Shewana3_2977 | 0.79 | -1.3 | |
3,578,621 | - | Shewana3_2977 | 0.79 | +0.3 | |
3,578,687 | - | +0.1 | |||
3,578,699 | + | +5.8 | |||
3,578,831 | + | +0.7 | |||
3,578,831 | + | -0.5 | |||
3,578,839 | - | -1.3 | |||
3,578,839 | - | +0.4 | |||
3,578,839 | - | +0.9 | |||
3,578,839 | - | -1.0 | |||
3,578,839 | - | +0.1 | |||
3,578,863 | - | -0.9 | |||
3,578,933 | - | -1.0 | |||
3,578,954 | + | -0.3 | |||
3,578,962 | - | +0.2 | |||
3,578,977 | - | -0.1 | |||
3,579,090 | + | +1.7 | |||
3,579,096 | - | -0.4 | |||
3,579,098 | - | -0.1 | |||
3,579,113 | - | +0.3 |
Or see this region's nucleotide sequence