Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2947

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2946 and Shewana3_2947 are separated by 63 nucleotidesShewana3_2947 and Shewana3_2948 are separated by 44 nucleotides Shewana3_2946: Shewana3_2946 - diguanylate cyclase (RefSeq), at 3,540,394 to 3,542,121 _2946 Shewana3_2947: Shewana3_2947 - hypothetical protein (RefSeq), at 3,542,185 to 3,542,397 _2947 Shewana3_2948: Shewana3_2948 - uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq), at 3,542,442 to 3,543,233 _2948 Position (kb) 3542 3543Strain fitness (log2 ratio) -2 -1 0 1 2at 3541.398 kb on - strand, within Shewana3_2946at 3541.550 kb on + strand, within Shewana3_2946at 3541.839 kb on + strand, within Shewana3_2946at 3541.839 kb on + strand, within Shewana3_2946at 3541.849 kb on - strand, within Shewana3_2946at 3541.912 kb on - strand, within Shewana3_2946at 3541.914 kb on + strand, within Shewana3_2946at 3541.924 kb on + strand, within Shewana3_2946at 3541.967 kb on + strandat 3542.149 kb on + strandat 3542.164 kb on + strandat 3542.251 kb on - strand, within Shewana3_2947at 3542.342 kb on + strand, within Shewana3_2947at 3542.435 kb on + strandat 3542.577 kb on - strand, within Shewana3_2948at 3542.627 kb on + strand, within Shewana3_2948at 3542.635 kb on - strand, within Shewana3_2948at 3542.635 kb on - strand, within Shewana3_2948at 3542.635 kb on - strand, within Shewana3_2948at 3542.635 kb on - strand, within Shewana3_2948at 3542.635 kb on - strand, within Shewana3_2948at 3542.642 kb on - strand, within Shewana3_2948at 3542.646 kb on + strand, within Shewana3_2948at 3542.692 kb on + strand, within Shewana3_2948at 3542.708 kb on + strand, within Shewana3_2948at 3542.708 kb on + strand, within Shewana3_2948at 3542.868 kb on + strand, within Shewana3_2948at 3542.958 kb on - strand, within Shewana3_2948at 3542.960 kb on - strand, within Shewana3_2948at 3543.045 kb on - strand, within Shewana3_2948at 3543.198 kb on + strandat 3543.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,541,398 - Shewana3_2946 0.58 -0.9
3,541,550 + Shewana3_2946 0.67 +0.0
3,541,839 + Shewana3_2946 0.84 -0.9
3,541,839 + Shewana3_2946 0.84 +2.3
3,541,849 - Shewana3_2946 0.84 +2.0
3,541,912 - Shewana3_2946 0.88 +0.0
3,541,914 + Shewana3_2946 0.88 +2.0
3,541,924 + Shewana3_2946 0.89 +0.8
3,541,967 + +0.9
3,542,149 + -0.3
3,542,164 + +2.3
3,542,251 - Shewana3_2947 0.31 -0.9
3,542,342 + Shewana3_2947 0.74 +0.0
3,542,435 + -2.2
3,542,577 - Shewana3_2948 0.17 -1.7
3,542,627 + Shewana3_2948 0.23 +0.2
3,542,635 - Shewana3_2948 0.24 +0.3
3,542,635 - Shewana3_2948 0.24 +0.7
3,542,635 - Shewana3_2948 0.24 +1.3
3,542,635 - Shewana3_2948 0.24 -1.2
3,542,635 - Shewana3_2948 0.24 -0.2
3,542,642 - Shewana3_2948 0.25 -0.2
3,542,646 + Shewana3_2948 0.26 -0.7
3,542,692 + Shewana3_2948 0.32 +0.2
3,542,708 + Shewana3_2948 0.34 +0.0
3,542,708 + Shewana3_2948 0.34 +0.1
3,542,868 + Shewana3_2948 0.54 -0.5
3,542,958 - Shewana3_2948 0.65 -1.7
3,542,960 - Shewana3_2948 0.65 -0.9
3,543,045 - Shewana3_2948 0.76 +2.3
3,543,198 + +0.2
3,543,310 - -2.0

Or see this region's nucleotide sequence