Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2930 and Shewana3_2931 are separated by 67 nucleotides Shewana3_2931 and Shewana3_2932 are separated by 118 nucleotides
Shewana3_2930: Shewana3_2930 - starch synthase catalytic subunit (RefSeq), at 3,513,871 to 3,515,460
_2930
Shewana3_2931: Shewana3_2931 - glucose-1-phosphate adenylyltransferase (RefSeq), at 3,515,528 to 3,516,790
_2931
Shewana3_2932: Shewana3_2932 - glycogen/starch/alpha-glucan phosphorylases (RefSeq), at 3,516,909 to 3,519,422
_2932
Position (kb)
3515
3516
3517 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3514.659 kb on + strand, within Shewana3_2930 at 3514.760 kb on - strand, within Shewana3_2930 at 3514.866 kb on + strand, within Shewana3_2930 at 3514.939 kb on - strand, within Shewana3_2930 at 3514.971 kb on + strand, within Shewana3_2930 at 3515.089 kb on + strand, within Shewana3_2930 at 3515.231 kb on + strand, within Shewana3_2930 at 3515.246 kb on + strand, within Shewana3_2930 at 3515.254 kb on - strand, within Shewana3_2930 at 3515.593 kb on + strand at 3515.601 kb on - strand at 3515.642 kb on + strand at 3515.732 kb on + strand, within Shewana3_2931 at 3515.748 kb on + strand, within Shewana3_2931 at 3515.756 kb on - strand, within Shewana3_2931 at 3515.800 kb on + strand, within Shewana3_2931 at 3515.926 kb on + strand, within Shewana3_2931 at 3515.926 kb on + strand, within Shewana3_2931 at 3515.934 kb on - strand, within Shewana3_2931 at 3515.934 kb on - strand, within Shewana3_2931 at 3515.934 kb on - strand, within Shewana3_2931 at 3515.934 kb on - strand, within Shewana3_2931 at 3515.990 kb on - strand, within Shewana3_2931 at 3516.327 kb on - strand, within Shewana3_2931 at 3516.408 kb on + strand, within Shewana3_2931 at 3516.416 kb on - strand, within Shewana3_2931 at 3516.621 kb on - strand, within Shewana3_2931 at 3516.821 kb on - strand at 3516.821 kb on - strand at 3516.845 kb on - strand at 3516.906 kb on + strand at 3517.175 kb on - strand, within Shewana3_2932 at 3517.249 kb on + strand, within Shewana3_2932 at 3517.321 kb on - strand, within Shewana3_2932 at 3517.332 kb on - strand, within Shewana3_2932 at 3517.687 kb on + strand, within Shewana3_2932
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,514,659 + Shewana3_2930 0.50 +1.2 3,514,760 - Shewana3_2930 0.56 -2.0 3,514,866 + Shewana3_2930 0.63 +0.6 3,514,939 - Shewana3_2930 0.67 -0.4 3,514,971 + Shewana3_2930 0.69 +0.4 3,515,089 + Shewana3_2930 0.77 +0.5 3,515,231 + Shewana3_2930 0.86 +0.2 3,515,246 + Shewana3_2930 0.86 +3.2 3,515,254 - Shewana3_2930 0.87 -0.5 3,515,593 + +0.8 3,515,601 - -0.3 3,515,642 + -0.3 3,515,732 + Shewana3_2931 0.16 -0.2 3,515,748 + Shewana3_2931 0.17 +0.4 3,515,756 - Shewana3_2931 0.18 -0.7 3,515,800 + Shewana3_2931 0.22 -0.5 3,515,926 + Shewana3_2931 0.32 -1.7 3,515,926 + Shewana3_2931 0.32 -0.6 3,515,934 - Shewana3_2931 0.32 -0.4 3,515,934 - Shewana3_2931 0.32 -0.2 3,515,934 - Shewana3_2931 0.32 -0.5 3,515,934 - Shewana3_2931 0.32 +0.6 3,515,990 - Shewana3_2931 0.37 -0.8 3,516,327 - Shewana3_2931 0.63 +0.0 3,516,408 + Shewana3_2931 0.70 +1.3 3,516,416 - Shewana3_2931 0.70 -0.6 3,516,621 - Shewana3_2931 0.87 -0.6 3,516,821 - -1.1 3,516,821 - +0.1 3,516,845 - +0.0 3,516,906 + -1.9 3,517,175 - Shewana3_2932 0.11 -0.4 3,517,249 + Shewana3_2932 0.14 +0.4 3,517,321 - Shewana3_2932 0.16 +0.3 3,517,332 - Shewana3_2932 0.17 -1.7 3,517,687 + Shewana3_2932 0.31 +1.2
Or see this region's nucleotide sequence