Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2894 and Shewana3_2895 are separated by 176 nucleotides Shewana3_2895 and Shewana3_2896 are separated by 151 nucleotides Shewana3_2896 and motB are separated by 216 nucleotides
Shewana3_2894: Shewana3_2894 - DNA-binding transcriptional activator GcvA (RefSeq), at 3,463,675 to 3,464,586
_2894
Shewana3_2895: Shewana3_2895 - hypothetical protein (RefSeq), at 3,464,763 to 3,464,996
_2895
Shewana3_2896: Shewana3_2896 - thiamine biosynthesis protein ThiI (RefSeq), at 3,465,148 to 3,466,602
_2896
Shewana3_2897: motB - flagellar motor protein MotB (RefSeq), at 3,466,819 to 3,467,739
motB
Position (kb)
3465
3466
3467 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 3464.801 kb on - strand, within Shewana3_2895 at 3464.884 kb on + strand, within Shewana3_2895 at 3464.884 kb on + strand, within Shewana3_2895 at 3464.940 kb on + strand, within Shewana3_2895 at 3465.070 kb on - strand at 3465.200 kb on - strand at 3465.238 kb on - strand at 3465.342 kb on - strand, within Shewana3_2896 at 3465.387 kb on - strand, within Shewana3_2896 at 3465.518 kb on + strand, within Shewana3_2896 at 3465.526 kb on - strand, within Shewana3_2896 at 3465.706 kb on + strand, within Shewana3_2896 at 3465.808 kb on - strand, within Shewana3_2896 at 3466.095 kb on - strand, within Shewana3_2896 at 3466.095 kb on - strand, within Shewana3_2896 at 3466.341 kb on + strand, within Shewana3_2896 at 3466.419 kb on - strand, within Shewana3_2896 at 3466.567 kb on - strand at 3466.731 kb on - strand at 3466.739 kb on - strand at 3466.861 kb on - strand at 3466.900 kb on + strand at 3466.931 kb on - strand, within motB at 3467.033 kb on - strand, within motB at 3467.054 kb on + strand, within motB at 3467.149 kb on - strand, within motB at 3467.149 kb on - strand, within motB at 3467.297 kb on + strand, within motB at 3467.546 kb on - strand, within motB
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,464,801 - Shewana3_2895 0.16 +0.2 3,464,884 + Shewana3_2895 0.52 -0.1 3,464,884 + Shewana3_2895 0.52 +0.1 3,464,940 + Shewana3_2895 0.76 -0.7 3,465,070 - +0.3 3,465,200 - +2.9 3,465,238 - +1.9 3,465,342 - Shewana3_2896 0.13 +3.1 3,465,387 - Shewana3_2896 0.16 +3.0 3,465,518 + Shewana3_2896 0.25 +3.3 3,465,526 - Shewana3_2896 0.26 +2.4 3,465,706 + Shewana3_2896 0.38 +3.8 3,465,808 - Shewana3_2896 0.45 +3.2 3,466,095 - Shewana3_2896 0.65 +2.4 3,466,095 - Shewana3_2896 0.65 +3.3 3,466,341 + Shewana3_2896 0.82 +4.8 3,466,419 - Shewana3_2896 0.87 +1.5 3,466,567 - +1.2 3,466,731 - -1.2 3,466,739 - -0.1 3,466,861 - +2.2 3,466,900 + +3.5 3,466,931 - motB Shewana3_2897 0.12 +4.6 3,467,033 - motB Shewana3_2897 0.23 +6.4 3,467,054 + motB Shewana3_2897 0.26 +3.3 3,467,149 - motB Shewana3_2897 0.36 +2.7 3,467,149 - motB Shewana3_2897 0.36 +3.8 3,467,297 + motB Shewana3_2897 0.52 +3.6 3,467,546 - motB Shewana3_2897 0.79 +4.2
Or see this region's nucleotide sequence