Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2840 and Shewana3_2841 are separated by 104 nucleotides Shewana3_2841 and Shewana3_2842 are separated by 8 nucleotides
Shewana3_2840: Shewana3_2840 - beta-ketoacyl synthase (RefSeq), at 3,386,332 to 3,394,206
_2840
Shewana3_2841: Shewana3_2841 - omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq), at 3,394,311 to 3,396,575
_2841
Shewana3_2842: Shewana3_2842 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq), at 3,396,584 to 3,402,553
_2842
Position (kb)
3394
3395
3396
3397 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3393.773 kb on + strand at 3393.785 kb on + strand at 3393.931 kb on + strand at 3393.931 kb on + strand at 3394.031 kb on + strand at 3394.100 kb on - strand at 3394.196 kb on + strand at 3394.230 kb on + strand at 3394.245 kb on + strand at 3394.253 kb on - strand at 3394.310 kb on + strand at 3394.604 kb on + strand, within Shewana3_2841 at 3394.642 kb on + strand, within Shewana3_2841 at 3394.674 kb on + strand, within Shewana3_2841 at 3394.710 kb on + strand, within Shewana3_2841 at 3394.857 kb on + strand at 3394.936 kb on + strand, within Shewana3_2841 at 3394.986 kb on + strand, within Shewana3_2841 at 3394.994 kb on - strand, within Shewana3_2841 at 3394.994 kb on - strand, within Shewana3_2841 at 3395.001 kb on - strand, within Shewana3_2841 at 3395.036 kb on + strand, within Shewana3_2841 at 3395.241 kb on - strand, within Shewana3_2841 at 3395.492 kb on - strand, within Shewana3_2841 at 3395.579 kb on - strand, within Shewana3_2841 at 3395.680 kb on + strand, within Shewana3_2841 at 3395.741 kb on + strand, within Shewana3_2841 at 3395.749 kb on - strand, within Shewana3_2841 at 3395.751 kb on + strand, within Shewana3_2841 at 3395.751 kb on + strand, within Shewana3_2841 at 3395.968 kb on + strand, within Shewana3_2841 at 3396.056 kb on - strand, within Shewana3_2841 at 3396.079 kb on - strand, within Shewana3_2841 at 3396.221 kb on + strand, within Shewana3_2841 at 3396.229 kb on - strand, within Shewana3_2841 at 3396.229 kb on - strand, within Shewana3_2841 at 3396.459 kb on - strand at 3396.642 kb on + strand at 3396.650 kb on - strand at 3396.811 kb on - strand at 3396.884 kb on - strand at 3396.884 kb on - strand at 3397.220 kb on - strand, within Shewana3_2842 at 3397.224 kb on + strand, within Shewana3_2842 at 3397.234 kb on + strand, within Shewana3_2842 at 3397.273 kb on - strand, within Shewana3_2842
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,393,773 + -1.5 3,393,785 + -0.0 3,393,931 + -1.4 3,393,931 + -2.1 3,394,031 + +0.5 3,394,100 - +0.2 3,394,196 + -1.2 3,394,230 + -0.6 3,394,245 + -1.6 3,394,253 - +1.8 3,394,310 + -0.8 3,394,604 + Shewana3_2841 0.13 -0.6 3,394,642 + Shewana3_2841 0.15 -1.8 3,394,674 + Shewana3_2841 0.16 +1.1 3,394,710 + Shewana3_2841 0.18 +0.8 3,394,857 + +2.4 3,394,936 + Shewana3_2841 0.28 +0.0 3,394,986 + Shewana3_2841 0.30 +3.4 3,394,994 - Shewana3_2841 0.30 -0.9 3,394,994 - Shewana3_2841 0.30 -1.0 3,395,001 - Shewana3_2841 0.30 +0.8 3,395,036 + Shewana3_2841 0.32 +0.2 3,395,241 - Shewana3_2841 0.41 -1.8 3,395,492 - Shewana3_2841 0.52 +2.4 3,395,579 - Shewana3_2841 0.56 -1.1 3,395,680 + Shewana3_2841 0.60 -2.6 3,395,741 + Shewana3_2841 0.63 +0.3 3,395,749 - Shewana3_2841 0.63 -0.7 3,395,751 + Shewana3_2841 0.64 -1.3 3,395,751 + Shewana3_2841 0.64 -0.2 3,395,968 + Shewana3_2841 0.73 -1.4 3,396,056 - Shewana3_2841 0.77 -0.2 3,396,079 - Shewana3_2841 0.78 -1.0 3,396,221 + Shewana3_2841 0.84 -0.5 3,396,229 - Shewana3_2841 0.85 -0.5 3,396,229 - Shewana3_2841 0.85 -0.5 3,396,459 - -0.7 3,396,642 + -1.8 3,396,650 - -1.8 3,396,811 - +0.0 3,396,884 - -0.5 3,396,884 - -1.7 3,397,220 - Shewana3_2842 0.11 -0.2 3,397,224 + Shewana3_2842 0.11 -2.2 3,397,234 + Shewana3_2842 0.11 -0.3 3,397,273 - Shewana3_2842 0.12 +0.4
Or see this region's nucleotide sequence