Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2841

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2840 and Shewana3_2841 are separated by 104 nucleotidesShewana3_2841 and Shewana3_2842 are separated by 8 nucleotides Shewana3_2840: Shewana3_2840 - beta-ketoacyl synthase (RefSeq), at 3,386,332 to 3,394,206 _2840 Shewana3_2841: Shewana3_2841 - omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq), at 3,394,311 to 3,396,575 _2841 Shewana3_2842: Shewana3_2842 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq), at 3,396,584 to 3,402,553 _2842 Position (kb) 3394 3395 3396 3397Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3393.773 kb on + strandat 3393.785 kb on + strandat 3393.931 kb on + strandat 3393.931 kb on + strandat 3394.031 kb on + strandat 3394.100 kb on - strandat 3394.196 kb on + strandat 3394.230 kb on + strandat 3394.245 kb on + strandat 3394.253 kb on - strandat 3394.310 kb on + strandat 3394.604 kb on + strand, within Shewana3_2841at 3394.642 kb on + strand, within Shewana3_2841at 3394.674 kb on + strand, within Shewana3_2841at 3394.710 kb on + strand, within Shewana3_2841at 3394.857 kb on + strandat 3394.936 kb on + strand, within Shewana3_2841at 3394.986 kb on + strand, within Shewana3_2841at 3394.994 kb on - strand, within Shewana3_2841at 3394.994 kb on - strand, within Shewana3_2841at 3395.001 kb on - strand, within Shewana3_2841at 3395.036 kb on + strand, within Shewana3_2841at 3395.241 kb on - strand, within Shewana3_2841at 3395.492 kb on - strand, within Shewana3_2841at 3395.579 kb on - strand, within Shewana3_2841at 3395.680 kb on + strand, within Shewana3_2841at 3395.741 kb on + strand, within Shewana3_2841at 3395.749 kb on - strand, within Shewana3_2841at 3395.751 kb on + strand, within Shewana3_2841at 3395.751 kb on + strand, within Shewana3_2841at 3395.968 kb on + strand, within Shewana3_2841at 3396.056 kb on - strand, within Shewana3_2841at 3396.079 kb on - strand, within Shewana3_2841at 3396.221 kb on + strand, within Shewana3_2841at 3396.229 kb on - strand, within Shewana3_2841at 3396.229 kb on - strand, within Shewana3_2841at 3396.459 kb on - strandat 3396.642 kb on + strandat 3396.650 kb on - strandat 3396.811 kb on - strandat 3396.884 kb on - strandat 3396.884 kb on - strandat 3397.220 kb on - strand, within Shewana3_2842at 3397.224 kb on + strand, within Shewana3_2842at 3397.234 kb on + strand, within Shewana3_2842at 3397.273 kb on - strand, within Shewana3_2842

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,393,773 + -1.5
3,393,785 + -0.0
3,393,931 + -1.4
3,393,931 + -2.1
3,394,031 + +0.5
3,394,100 - +0.2
3,394,196 + -1.2
3,394,230 + -0.6
3,394,245 + -1.6
3,394,253 - +1.8
3,394,310 + -0.8
3,394,604 + Shewana3_2841 0.13 -0.6
3,394,642 + Shewana3_2841 0.15 -1.8
3,394,674 + Shewana3_2841 0.16 +1.1
3,394,710 + Shewana3_2841 0.18 +0.8
3,394,857 + +2.4
3,394,936 + Shewana3_2841 0.28 +0.0
3,394,986 + Shewana3_2841 0.30 +3.4
3,394,994 - Shewana3_2841 0.30 -0.9
3,394,994 - Shewana3_2841 0.30 -1.0
3,395,001 - Shewana3_2841 0.30 +0.8
3,395,036 + Shewana3_2841 0.32 +0.2
3,395,241 - Shewana3_2841 0.41 -1.8
3,395,492 - Shewana3_2841 0.52 +2.4
3,395,579 - Shewana3_2841 0.56 -1.1
3,395,680 + Shewana3_2841 0.60 -2.6
3,395,741 + Shewana3_2841 0.63 +0.3
3,395,749 - Shewana3_2841 0.63 -0.7
3,395,751 + Shewana3_2841 0.64 -1.3
3,395,751 + Shewana3_2841 0.64 -0.2
3,395,968 + Shewana3_2841 0.73 -1.4
3,396,056 - Shewana3_2841 0.77 -0.2
3,396,079 - Shewana3_2841 0.78 -1.0
3,396,221 + Shewana3_2841 0.84 -0.5
3,396,229 - Shewana3_2841 0.85 -0.5
3,396,229 - Shewana3_2841 0.85 -0.5
3,396,459 - -0.7
3,396,642 + -1.8
3,396,650 - -1.8
3,396,811 - +0.0
3,396,884 - -0.5
3,396,884 - -1.7
3,397,220 - Shewana3_2842 0.11 -0.2
3,397,224 + Shewana3_2842 0.11 -2.2
3,397,234 + Shewana3_2842 0.11 -0.3
3,397,273 - Shewana3_2842 0.12 +0.4

Or see this region's nucleotide sequence