Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2840

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2839 and Shewana3_2840 overlap by 4 nucleotidesShewana3_2840 and Shewana3_2841 are separated by 104 nucleotides Shewana3_2839: Shewana3_2839 - transcriptional regulator, putative (RefSeq), at 3,385,466 to 3,386,335 _2839 Shewana3_2840: Shewana3_2840 - beta-ketoacyl synthase (RefSeq), at 3,386,332 to 3,394,206 _2840 Shewana3_2841: Shewana3_2841 - omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq), at 3,394,311 to 3,396,575 _2841 Position (kb) 3386 3387 3388 3389 3390 3391 3392 3393 3394 3395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3385.402 kb on + strandat 3385.410 kb on - strandat 3385.578 kb on + strand, within Shewana3_2839at 3385.717 kb on + strand, within Shewana3_2839at 3385.725 kb on - strand, within Shewana3_2839at 3385.728 kb on + strand, within Shewana3_2839at 3385.736 kb on - strand, within Shewana3_2839at 3385.798 kb on + strand, within Shewana3_2839at 3385.798 kb on + strand, within Shewana3_2839at 3385.806 kb on - strand, within Shewana3_2839at 3385.806 kb on - strand, within Shewana3_2839at 3385.806 kb on - strand, within Shewana3_2839at 3385.844 kb on + strand, within Shewana3_2839at 3385.963 kb on - strand, within Shewana3_2839at 3385.963 kb on - strand, within Shewana3_2839at 3385.963 kb on - strand, within Shewana3_2839at 3386.051 kb on - strand, within Shewana3_2839at 3386.170 kb on - strand, within Shewana3_2839at 3386.391 kb on + strandat 3386.679 kb on - strandat 3386.719 kb on - strandat 3386.786 kb on + strandat 3386.786 kb on + strandat 3386.899 kb on + strandat 3387.122 kb on - strand, within Shewana3_2840at 3387.345 kb on - strand, within Shewana3_2840at 3387.347 kb on + strand, within Shewana3_2840at 3387.534 kb on + strand, within Shewana3_2840at 3387.632 kb on - strand, within Shewana3_2840at 3387.831 kb on - strand, within Shewana3_2840at 3387.849 kb on + strand, within Shewana3_2840at 3387.881 kb on - strand, within Shewana3_2840at 3388.027 kb on + strand, within Shewana3_2840at 3388.124 kb on - strand, within Shewana3_2840at 3388.124 kb on - strand, within Shewana3_2840at 3388.230 kb on - strand, within Shewana3_2840at 3388.335 kb on + strand, within Shewana3_2840at 3388.382 kb on - strand, within Shewana3_2840at 3388.457 kb on - strand, within Shewana3_2840at 3388.471 kb on + strand, within Shewana3_2840at 3388.831 kb on + strand, within Shewana3_2840at 3388.917 kb on + strand, within Shewana3_2840at 3389.113 kb on + strand, within Shewana3_2840at 3389.593 kb on - strand, within Shewana3_2840at 3389.654 kb on + strand, within Shewana3_2840at 3389.687 kb on - strand, within Shewana3_2840at 3389.740 kb on + strand, within Shewana3_2840at 3389.844 kb on + strand, within Shewana3_2840at 3390.147 kb on - strand, within Shewana3_2840at 3390.192 kb on + strand, within Shewana3_2840at 3390.208 kb on - strand, within Shewana3_2840at 3390.296 kb on - strand, within Shewana3_2840at 3390.448 kb on + strand, within Shewana3_2840at 3390.475 kb on + strand, within Shewana3_2840at 3390.578 kb on + strand, within Shewana3_2840at 3390.584 kb on - strand, within Shewana3_2840at 3390.691 kb on - strand, within Shewana3_2840at 3390.693 kb on - strand, within Shewana3_2840at 3390.799 kb on - strand, within Shewana3_2840at 3390.959 kb on + strand, within Shewana3_2840at 3391.028 kb on - strand, within Shewana3_2840at 3391.115 kb on + strand, within Shewana3_2840at 3391.167 kb on - strand, within Shewana3_2840at 3391.225 kb on + strand, within Shewana3_2840at 3391.414 kb on - strand, within Shewana3_2840at 3391.544 kb on + strand, within Shewana3_2840at 3391.749 kb on - strand, within Shewana3_2840at 3391.902 kb on + strand, within Shewana3_2840at 3392.129 kb on + strand, within Shewana3_2840at 3392.130 kb on + strand, within Shewana3_2840at 3392.162 kb on + strand, within Shewana3_2840at 3392.587 kb on + strand, within Shewana3_2840at 3392.587 kb on + strand, within Shewana3_2840at 3392.595 kb on - strand, within Shewana3_2840at 3392.624 kb on + strand, within Shewana3_2840at 3392.706 kb on + strand, within Shewana3_2840at 3392.818 kb on - strand, within Shewana3_2840at 3392.861 kb on + strand, within Shewana3_2840at 3392.904 kb on + strand, within Shewana3_2840at 3392.909 kb on + strand, within Shewana3_2840at 3392.942 kb on - strand, within Shewana3_2840at 3392.957 kb on - strandat 3392.996 kb on - strand, within Shewana3_2840at 3393.195 kb on - strand, within Shewana3_2840at 3393.773 kb on + strandat 3393.785 kb on + strandat 3393.931 kb on + strandat 3393.931 kb on + strandat 3394.031 kb on + strandat 3394.100 kb on - strandat 3394.196 kb on + strandat 3394.230 kb on + strandat 3394.245 kb on + strandat 3394.253 kb on - strandat 3394.310 kb on + strandat 3394.604 kb on + strand, within Shewana3_2841at 3394.642 kb on + strand, within Shewana3_2841at 3394.674 kb on + strand, within Shewana3_2841at 3394.710 kb on + strand, within Shewana3_2841at 3394.857 kb on + strandat 3394.936 kb on + strand, within Shewana3_2841at 3394.986 kb on + strand, within Shewana3_2841at 3394.994 kb on - strand, within Shewana3_2841at 3394.994 kb on - strand, within Shewana3_2841at 3395.001 kb on - strand, within Shewana3_2841at 3395.036 kb on + strand, within Shewana3_2841

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,385,402 + -1.2
3,385,410 - -0.7
3,385,578 + Shewana3_2839 0.13 -0.3
3,385,717 + Shewana3_2839 0.29 +1.4
3,385,725 - Shewana3_2839 0.30 -0.5
3,385,728 + Shewana3_2839 0.30 +1.0
3,385,736 - Shewana3_2839 0.31 +0.5
3,385,798 + Shewana3_2839 0.38 -1.6
3,385,798 + Shewana3_2839 0.38 -0.3
3,385,806 - Shewana3_2839 0.39 +0.4
3,385,806 - Shewana3_2839 0.39 -1.7
3,385,806 - Shewana3_2839 0.39 -1.7
3,385,844 + Shewana3_2839 0.43 +0.5
3,385,963 - Shewana3_2839 0.57 +0.5
3,385,963 - Shewana3_2839 0.57 +0.4
3,385,963 - Shewana3_2839 0.57 -0.3
3,386,051 - Shewana3_2839 0.67 +0.2
3,386,170 - Shewana3_2839 0.81 -0.7
3,386,391 + +1.8
3,386,679 - -1.0
3,386,719 - +0.4
3,386,786 + +2.4
3,386,786 + +1.6
3,386,899 + -1.2
3,387,122 - Shewana3_2840 0.10 +1.9
3,387,345 - Shewana3_2840 0.13 -0.7
3,387,347 + Shewana3_2840 0.13 +0.5
3,387,534 + Shewana3_2840 0.15 -0.5
3,387,632 - Shewana3_2840 0.17 -1.2
3,387,831 - Shewana3_2840 0.19 -0.6
3,387,849 + Shewana3_2840 0.19 -0.6
3,387,881 - Shewana3_2840 0.20 -1.6
3,388,027 + Shewana3_2840 0.22 +0.8
3,388,124 - Shewana3_2840 0.23 +2.4
3,388,124 - Shewana3_2840 0.23 -1.1
3,388,230 - Shewana3_2840 0.24 -0.2
3,388,335 + Shewana3_2840 0.25 -1.8
3,388,382 - Shewana3_2840 0.26 +0.9
3,388,457 - Shewana3_2840 0.27 +0.0
3,388,471 + Shewana3_2840 0.27 +0.2
3,388,831 + Shewana3_2840 0.32 -2.3
3,388,917 + Shewana3_2840 0.33 -1.3
3,389,113 + Shewana3_2840 0.35 -3.4
3,389,593 - Shewana3_2840 0.41 +0.0
3,389,654 + Shewana3_2840 0.42 +1.8
3,389,687 - Shewana3_2840 0.43 +2.4
3,389,740 + Shewana3_2840 0.43 -1.5
3,389,844 + Shewana3_2840 0.45 -1.3
3,390,147 - Shewana3_2840 0.48 +0.2
3,390,192 + Shewana3_2840 0.49 -0.9
3,390,208 - Shewana3_2840 0.49 -1.5
3,390,296 - Shewana3_2840 0.50 +1.4
3,390,448 + Shewana3_2840 0.52 -1.2
3,390,475 + Shewana3_2840 0.53 +1.5
3,390,578 + Shewana3_2840 0.54 -1.2
3,390,584 - Shewana3_2840 0.54 -0.6
3,390,691 - Shewana3_2840 0.55 +0.2
3,390,693 - Shewana3_2840 0.55 -0.9
3,390,799 - Shewana3_2840 0.57 -2.4
3,390,959 + Shewana3_2840 0.59 -0.9
3,391,028 - Shewana3_2840 0.60 -0.2
3,391,115 + Shewana3_2840 0.61 -0.8
3,391,167 - Shewana3_2840 0.61 +1.8
3,391,225 + Shewana3_2840 0.62 -1.1
3,391,414 - Shewana3_2840 0.65 -0.8
3,391,544 + Shewana3_2840 0.66 -1.4
3,391,749 - Shewana3_2840 0.69 +3.4
3,391,902 + Shewana3_2840 0.71 -0.2
3,392,129 + Shewana3_2840 0.74 -2.0
3,392,130 + Shewana3_2840 0.74 -0.6
3,392,162 + Shewana3_2840 0.74 -1.7
3,392,587 + Shewana3_2840 0.79 -1.6
3,392,587 + Shewana3_2840 0.79 -1.9
3,392,595 - Shewana3_2840 0.80 +0.7
3,392,624 + Shewana3_2840 0.80 -1.0
3,392,706 + Shewana3_2840 0.81 -2.7
3,392,818 - Shewana3_2840 0.82 -1.1
3,392,861 + Shewana3_2840 0.83 -0.8
3,392,904 + Shewana3_2840 0.83 -1.6
3,392,909 + Shewana3_2840 0.84 +0.4
3,392,942 - Shewana3_2840 0.84 +0.0
3,392,957 - +3.4
3,392,996 - Shewana3_2840 0.85 -0.6
3,393,195 - Shewana3_2840 0.87 +1.8
3,393,773 + -1.5
3,393,785 + -0.0
3,393,931 + -1.4
3,393,931 + -2.1
3,394,031 + +0.5
3,394,100 - +0.2
3,394,196 + -1.2
3,394,230 + -0.6
3,394,245 + -1.6
3,394,253 - +1.8
3,394,310 + -0.8
3,394,604 + Shewana3_2841 0.13 -0.6
3,394,642 + Shewana3_2841 0.15 -1.8
3,394,674 + Shewana3_2841 0.16 +1.1
3,394,710 + Shewana3_2841 0.18 +0.8
3,394,857 + +2.4
3,394,936 + Shewana3_2841 0.28 +0.0
3,394,986 + Shewana3_2841 0.30 +3.4
3,394,994 - Shewana3_2841 0.30 -0.9
3,394,994 - Shewana3_2841 0.30 -1.0
3,395,001 - Shewana3_2841 0.30 +0.8
3,395,036 + Shewana3_2841 0.32 +0.2

Or see this region's nucleotide sequence