Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsB and Shewana3_R0115 are separated by 23 nucleotides Shewana3_R0115 and Shewana3_2816 are separated by 94 nucleotides Shewana3_2816 and Shewana3_2817 are separated by 68 nucleotides
Shewana3_2815: rpsB - 30S ribosomal protein S2 (RefSeq), at 3,361,785 to 3,362,513
rpsB
Shewana3_R0115: Shewana3_R0115 - t44 RNA (NCBI), at 3,362,537 to 3,362,688
_R0115
Shewana3_2816: Shewana3_2816 - methionine aminopeptidase (RefSeq), at 3,362,783 to 3,363,619
_2816
Shewana3_2817: Shewana3_2817 - PII uridylyl-transferase (RefSeq), at 3,363,688 to 3,366,273
_2817
Position (kb)
3362
3363
3364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3362.841 kb on - strand at 3362.870 kb on + strand, within Shewana3_2816 at 3362.923 kb on - strand, within Shewana3_2816 at 3362.942 kb on - strand, within Shewana3_2816 at 3363.218 kb on - strand, within Shewana3_2816 at 3363.244 kb on + strand, within Shewana3_2816 at 3363.407 kb on + strand, within Shewana3_2816 at 3363.440 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.470 kb on + strand, within Shewana3_2816 at 3363.478 kb on - strand, within Shewana3_2816 at 3363.478 kb on - strand, within Shewana3_2816 at 3363.569 kb on - strand at 3363.620 kb on + strand at 3363.635 kb on - strand at 3363.698 kb on - strand at 3363.902 kb on - strand at 3364.040 kb on + strand, within Shewana3_2817 at 3364.048 kb on - strand, within Shewana3_2817 at 3364.417 kb on - strand, within Shewana3_2817 at 3364.463 kb on - strand, within Shewana3_2817 at 3364.470 kb on - strand, within Shewana3_2817 at 3364.556 kb on + strand, within Shewana3_2817 at 3364.590 kb on + strand, within Shewana3_2817 at 3364.611 kb on - strand, within Shewana3_2817
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,362,841 - -0.2 3,362,870 + Shewana3_2816 0.10 +0.2 3,362,923 - Shewana3_2816 0.17 -2.2 3,362,942 - Shewana3_2816 0.19 -1.0 3,363,218 - Shewana3_2816 0.52 +0.3 3,363,244 + Shewana3_2816 0.55 -2.1 3,363,407 + Shewana3_2816 0.75 -1.2 3,363,440 + Shewana3_2816 0.78 -1.5 3,363,470 + Shewana3_2816 0.82 -1.9 3,363,470 + Shewana3_2816 0.82 -2.0 3,363,470 + Shewana3_2816 0.82 +1.2 3,363,470 + Shewana3_2816 0.82 -0.3 3,363,470 + Shewana3_2816 0.82 -2.0 3,363,470 + Shewana3_2816 0.82 -1.3 3,363,470 + Shewana3_2816 0.82 -0.7 3,363,478 - Shewana3_2816 0.83 -0.1 3,363,478 - Shewana3_2816 0.83 +0.8 3,363,569 - +1.9 3,363,620 + -1.9 3,363,635 - +0.5 3,363,698 - -0.0 3,363,902 - +1.6 3,364,040 + Shewana3_2817 0.14 +2.0 3,364,048 - Shewana3_2817 0.14 +0.9 3,364,417 - Shewana3_2817 0.28 +2.5 3,364,463 - Shewana3_2817 0.30 +1.4 3,364,470 - Shewana3_2817 0.30 -0.2 3,364,556 + Shewana3_2817 0.34 +1.4 3,364,590 + Shewana3_2817 0.35 +1.6 3,364,611 - Shewana3_2817 0.36 +2.6
Or see this region's nucleotide sequence