Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2733 and Shewana3_2734 are separated by 59 nucleotides Shewana3_2734 and Shewana3_2735 are separated by 199 nucleotides Shewana3_2735 and Shewana3_2736 are separated by 60 nucleotides
Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499
_2733
Shewana3_2734: Shewana3_2734 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,264,559 to 3,266,817
_2734
Shewana3_2735: Shewana3_2735 - ACT domain-containing protein (RefSeq), at 3,267,017 to 3,267,517
_2735
Shewana3_2736: Shewana3_2736 - hypothetical protein (RefSeq), at 3,267,578 to 3,268,465
_2736
Position (kb)
3264
3265
3266
3267 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3263.689 kb on - strand, within Shewana3_2733 at 3264.201 kb on - strand, within Shewana3_2733 at 3264.576 kb on - strand at 3264.668 kb on - strand at 3264.743 kb on - strand at 3264.772 kb on - strand at 3265.256 kb on - strand at 3265.573 kb on - strand, within Shewana3_2734 at 3266.797 kb on - strand at 3267.114 kb on + strand, within Shewana3_2735 at 3267.114 kb on + strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.219 kb on + strand, within Shewana3_2735 at 3267.290 kb on - strand, within Shewana3_2735 at 3267.381 kb on - strand, within Shewana3_2735 at 3267.389 kb on - strand, within Shewana3_2735 at 3267.416 kb on + strand, within Shewana3_2735 at 3267.446 kb on - strand, within Shewana3_2735 at 3267.461 kb on + strand, within Shewana3_2735 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.795 kb on + strand, within Shewana3_2736 at 3267.803 kb on - strand, within Shewana3_2736
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,263,689 - Shewana3_2733 0.51 -0.3 3,264,201 - Shewana3_2733 0.82 +0.8 3,264,576 - -1.2 3,264,668 - -2.1 3,264,743 - -0.6 3,264,772 - -3.0 3,265,256 - +2.4 3,265,573 - Shewana3_2734 0.45 +3.4 3,266,797 - +4.4 3,267,114 + Shewana3_2735 0.19 +1.0 3,267,114 + Shewana3_2735 0.19 +1.4 3,267,122 - Shewana3_2735 0.21 -1.4 3,267,122 - Shewana3_2735 0.21 +0.8 3,267,122 - Shewana3_2735 0.21 +0.2 3,267,219 + Shewana3_2735 0.40 -0.3 3,267,290 - Shewana3_2735 0.54 -0.8 3,267,381 - Shewana3_2735 0.73 +0.4 3,267,389 - Shewana3_2735 0.74 +1.5 3,267,416 + Shewana3_2735 0.80 -0.5 3,267,446 - Shewana3_2735 0.86 -1.0 3,267,461 + Shewana3_2735 0.89 +0.2 3,267,679 + Shewana3_2736 0.11 +0.4 3,267,679 + Shewana3_2736 0.11 +0.4 3,267,679 + Shewana3_2736 0.11 +0.8 3,267,687 - Shewana3_2736 0.12 -0.3 3,267,687 - Shewana3_2736 0.12 -1.3 3,267,795 + Shewana3_2736 0.24 +0.5 3,267,803 - Shewana3_2736 0.25 -1.9
Or see this region's nucleotide sequence