Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2729 and Shewana3_2730 are separated by 79 nucleotides Shewana3_2730 and Shewana3_2731 are separated by 410 nucleotides Shewana3_2731 and Shewana3_2732 are separated by 127 nucleotides Shewana3_2732 and Shewana3_2733 are separated by 33 nucleotides
Shewana3_2729: Shewana3_2729 - hypothetical protein (RefSeq), at 3,259,609 to 3,260,208
_2729
Shewana3_2730: Shewana3_2730 - hypothetical protein (RefSeq), at 3,260,288 to 3,260,740
_2730
Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861
_2731
Shewana3_2732: Shewana3_2732 - phosphate ABC transporter, ATPase subunit (RefSeq), at 3,261,989 to 3,262,807
_2732
Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499
_2733
Position (kb)
3261
3262 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3260.247 kb on + strand at 3260.255 kb on - strand at 3260.905 kb on - strand at 3261.878 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3262.169 kb on - strand, within Shewana3_2732 at 3262.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,260,247 + -0.2 3,260,255 - +1.8 3,260,905 - -2.7 3,261,878 - -2.0 3,261,930 - -0.2 3,261,930 - -0.7 3,261,930 - -0.4 3,262,169 - Shewana3_2732 0.22 +0.5 3,262,599 - +1.4
Or see this region's nucleotide sequence