Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2730
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,259,391 | + | Shewana3_2728 | 0.55 | +3.4 | |
3,259,405 | + | Shewana3_2728 | 0.58 | +0.4 | |
3,259,412 | - | Shewana3_2728 | 0.60 | +1.0 | |
3,259,428 | - | Shewana3_2728 | 0.63 | +7.4 | |
3,259,448 | + | Shewana3_2728 | 0.68 | -0.1 | |
3,259,456 | - | Shewana3_2728 | 0.70 | +0.0 | |
3,259,460 | + | Shewana3_2728 | 0.70 | -0.6 | |
3,259,460 | + | Shewana3_2728 | 0.70 | -1.6 | |
3,259,468 | - | Shewana3_2728 | 0.72 | +3.4 | |
3,259,579 | + | -0.9 | |||
3,259,579 | + | -1.3 | |||
3,259,619 | - | +2.4 | |||
3,259,644 | + | +0.4 | |||
3,259,835 | - | Shewana3_2729 | 0.38 | -0.3 | |
3,259,925 | + | Shewana3_2729 | 0.53 | +1.4 | |
3,259,971 | - | Shewana3_2729 | 0.60 | -0.6 | |
3,260,026 | - | Shewana3_2729 | 0.69 | +0.8 | |
3,260,148 | + | Shewana3_2729 | 0.90 | -0.5 | |
3,260,247 | + | -0.2 | |||
3,260,255 | - | +1.8 | |||
3,260,905 | - | -2.7 |
Or see this region's nucleotide sequence