Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2720

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2719 and Shewana3_2720 are separated by 653 nucleotidesShewana3_2720 and Shewana3_2721 are separated by 155 nucleotidesShewana3_2721 and Shewana3_2722 are separated by 52 nucleotides Shewana3_2719: Shewana3_2719 - choline/carnitine/betaine transporter (RefSeq), at 3,249,328 to 3,251,304 _2719 Shewana3_2720: Shewana3_2720 - hypothetical protein (RefSeq), at 3,251,958 to 3,252,563 _2720 Shewana3_2721: Shewana3_2721 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,252,719 to 3,253,114 _2721 Shewana3_2722: Shewana3_2722 - LysR family transcriptional regulator (RefSeq), at 3,253,167 to 3,254,054 _2722 Position (kb) 3251 3252 3253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3250.990 kb on - strand, within Shewana3_2719at 3251.023 kb on + strand, within Shewana3_2719at 3251.316 kb on + strandat 3251.324 kb on - strandat 3251.324 kb on - strandat 3251.537 kb on - strandat 3251.642 kb on + strandat 3251.733 kb on - strandat 3251.772 kb on - strandat 3251.773 kb on + strandat 3251.815 kb on - strandat 3252.238 kb on + strand, within Shewana3_2720at 3252.246 kb on - strand, within Shewana3_2720at 3252.296 kb on - strand, within Shewana3_2720at 3252.306 kb on - strand, within Shewana3_2720at 3252.361 kb on - strand, within Shewana3_2720at 3252.361 kb on - strand, within Shewana3_2720at 3252.518 kb on - strandat 3252.540 kb on + strandat 3252.715 kb on + strandat 3252.740 kb on - strandat 3252.798 kb on - strand, within Shewana3_2721at 3252.802 kb on - strand, within Shewana3_2721at 3252.829 kb on - strand, within Shewana3_2721at 3253.005 kb on + strand, within Shewana3_2721at 3253.013 kb on - strand, within Shewana3_2721at 3253.291 kb on + strand, within Shewana3_2722at 3253.306 kb on + strand, within Shewana3_2722at 3253.306 kb on + strand, within Shewana3_2722at 3253.306 kb on + strand, within Shewana3_2722at 3253.306 kb on + strand, within Shewana3_2722at 3253.306 kb on + strand, within Shewana3_2722at 3253.306 kb on + strand, within Shewana3_2722at 3253.306 kb on + strand, within Shewana3_2722at 3253.314 kb on - strand, within Shewana3_2722at 3253.314 kb on - strand, within Shewana3_2722at 3253.314 kb on - strand, within Shewana3_2722at 3253.548 kb on - strand, within Shewana3_2722

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,250,990 - Shewana3_2719 0.84 +0.9
3,251,023 + Shewana3_2719 0.86 +0.0
3,251,316 + -1.2
3,251,324 - +1.8
3,251,324 - -0.1
3,251,537 - -0.6
3,251,642 + +2.3
3,251,733 - +0.5
3,251,772 - -1.4
3,251,773 + +3.3
3,251,815 - +1.0
3,252,238 + Shewana3_2720 0.46 +3.3
3,252,246 - Shewana3_2720 0.48 -1.9
3,252,296 - Shewana3_2720 0.56 -0.9
3,252,306 - Shewana3_2720 0.57 +0.4
3,252,361 - Shewana3_2720 0.67 +0.3
3,252,361 - Shewana3_2720 0.67 +0.5
3,252,518 - +1.0
3,252,540 + +0.6
3,252,715 + -1.2
3,252,740 - +0.5
3,252,798 - Shewana3_2721 0.20 +0.6
3,252,802 - Shewana3_2721 0.21 -0.3
3,252,829 - Shewana3_2721 0.28 +1.0
3,253,005 + Shewana3_2721 0.72 +3.3
3,253,013 - Shewana3_2721 0.74 +1.3
3,253,291 + Shewana3_2722 0.14 -0.3
3,253,306 + Shewana3_2722 0.16 +0.4
3,253,306 + Shewana3_2722 0.16 -1.3
3,253,306 + Shewana3_2722 0.16 -0.3
3,253,306 + Shewana3_2722 0.16 -0.3
3,253,306 + Shewana3_2722 0.16 +1.5
3,253,306 + Shewana3_2722 0.16 +1.0
3,253,306 + Shewana3_2722 0.16 -0.6
3,253,314 - Shewana3_2722 0.17 +1.1
3,253,314 - Shewana3_2722 0.17 -0.9
3,253,314 - Shewana3_2722 0.17 -0.4
3,253,548 - Shewana3_2722 0.43 +0.5

Or see this region's nucleotide sequence