Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2718

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2716 and Shewana3_2717 are separated by 331 nucleotidesShewana3_2717 and Shewana3_2718 are separated by 25 nucleotidesShewana3_2718 and Shewana3_2719 are separated by 88 nucleotides Shewana3_2716: Shewana3_2716 - hypothetical protein (RefSeq), at 3,246,916 to 3,248,286 _2716 Shewana3_2717: Shewana3_2717 - hypothetical protein (RefSeq), at 3,248,618 to 3,248,851 _2717 Shewana3_2718: Shewana3_2718 - hypothetical protein (RefSeq), at 3,248,877 to 3,249,239 _2718 Shewana3_2719: Shewana3_2719 - choline/carnitine/betaine transporter (RefSeq), at 3,249,328 to 3,251,304 _2719 Position (kb) 3248 3249 3250Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3247.877 kb on - strand, within Shewana3_2716at 3247.921 kb on + strand, within Shewana3_2716at 3248.001 kb on - strand, within Shewana3_2716at 3248.097 kb on + strand, within Shewana3_2716at 3248.105 kb on - strand, within Shewana3_2716at 3248.105 kb on - strand, within Shewana3_2716at 3248.132 kb on + strand, within Shewana3_2716at 3248.264 kb on + strandat 3248.309 kb on - strandat 3248.427 kb on + strandat 3248.435 kb on - strandat 3248.552 kb on + strandat 3248.795 kb on + strand, within Shewana3_2717at 3248.795 kb on + strand, within Shewana3_2717at 3248.803 kb on - strand, within Shewana3_2717at 3248.919 kb on + strand, within Shewana3_2718at 3248.969 kb on - strand, within Shewana3_2718at 3249.209 kb on - strandat 3249.229 kb on - strandat 3249.507 kb on - strandat 3249.551 kb on - strand, within Shewana3_2719at 3249.634 kb on - strand, within Shewana3_2719at 3249.779 kb on - strand, within Shewana3_2719at 3249.793 kb on - strand, within Shewana3_2719at 3249.830 kb on + strand, within Shewana3_2719at 3249.830 kb on + strand, within Shewana3_2719at 3249.838 kb on - strand, within Shewana3_2719at 3249.840 kb on + strand, within Shewana3_2719at 3249.848 kb on - strand, within Shewana3_2719at 3249.848 kb on - strand, within Shewana3_2719at 3249.848 kb on - strand, within Shewana3_2719at 3249.899 kb on + strand, within Shewana3_2719at 3249.962 kb on + strand, within Shewana3_2719at 3249.962 kb on + strand, within Shewana3_2719at 3250.038 kb on + strand, within Shewana3_2719at 3250.151 kb on - strand, within Shewana3_2719

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,247,877 - Shewana3_2716 0.70 -0.5
3,247,921 + Shewana3_2716 0.73 +0.0
3,248,001 - Shewana3_2716 0.79 -0.6
3,248,097 + Shewana3_2716 0.86 -0.2
3,248,105 - Shewana3_2716 0.87 +2.0
3,248,105 - Shewana3_2716 0.87 -0.2
3,248,132 + Shewana3_2716 0.89 -0.5
3,248,264 + -1.3
3,248,309 - -0.1
3,248,427 + +0.4
3,248,435 - +0.3
3,248,552 + +0.5
3,248,795 + Shewana3_2717 0.76 +3.7
3,248,795 + Shewana3_2717 0.76 -1.4
3,248,803 - Shewana3_2717 0.79 +0.3
3,248,919 + Shewana3_2718 0.12 +0.0
3,248,969 - Shewana3_2718 0.25 -1.6
3,249,209 - +0.7
3,249,229 - +1.3
3,249,507 - +0.9
3,249,551 - Shewana3_2719 0.11 +0.5
3,249,634 - Shewana3_2719 0.15 -0.5
3,249,779 - Shewana3_2719 0.23 +1.3
3,249,793 - Shewana3_2719 0.24 -1.4
3,249,830 + Shewana3_2719 0.25 -1.8
3,249,830 + Shewana3_2719 0.25 -0.4
3,249,838 - Shewana3_2719 0.26 -0.2
3,249,840 + Shewana3_2719 0.26 +2.3
3,249,848 - Shewana3_2719 0.26 -0.2
3,249,848 - Shewana3_2719 0.26 -0.6
3,249,848 - Shewana3_2719 0.26 +0.3
3,249,899 + Shewana3_2719 0.29 +1.8
3,249,962 + Shewana3_2719 0.32 -0.1
3,249,962 + Shewana3_2719 0.32 +2.3
3,250,038 + Shewana3_2719 0.36 +1.3
3,250,151 - Shewana3_2719 0.42 +0.7

Or see this region's nucleotide sequence