Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2714 and Shewana3_2715 are separated by 170 nucleotides Shewana3_2715 and Shewana3_2716 are separated by 254 nucleotides
Shewana3_2714: Shewana3_2714 - alpha/beta hydrolase fold (RefSeq), at 3,244,479 to 3,245,441
_2714
Shewana3_2715: Shewana3_2715 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 3,245,612 to 3,246,661
_2715
Shewana3_2716: Shewana3_2716 - hypothetical protein (RefSeq), at 3,246,916 to 3,248,286
_2716
Position (kb)
3245
3246
3247 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3244.978 kb on - strand, within Shewana3_2714 at 3244.983 kb on - strand, within Shewana3_2714 at 3245.028 kb on - strand, within Shewana3_2714 at 3245.091 kb on - strand, within Shewana3_2714 at 3245.132 kb on - strand, within Shewana3_2714 at 3245.174 kb on - strand, within Shewana3_2714 at 3245.206 kb on - strand, within Shewana3_2714 at 3245.367 kb on - strand at 3245.569 kb on - strand at 3245.574 kb on - strand at 3245.592 kb on - strand at 3245.647 kb on - strand at 3245.732 kb on - strand, within Shewana3_2715 at 3245.807 kb on - strand, within Shewana3_2715 at 3245.895 kb on + strand, within Shewana3_2715 at 3246.399 kb on - strand, within Shewana3_2715 at 3246.628 kb on - strand at 3246.804 kb on + strand at 3246.810 kb on - strand at 3246.818 kb on + strand at 3247.047 kb on - strand at 3247.331 kb on - strand, within Shewana3_2716 at 3247.353 kb on - strand, within Shewana3_2716 at 3247.360 kb on + strand, within Shewana3_2716 at 3247.592 kb on + strand, within Shewana3_2716
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,244,978 - Shewana3_2714 0.52 -0.6 3,244,983 - Shewana3_2714 0.52 -1.1 3,245,028 - Shewana3_2714 0.57 -1.4 3,245,091 - Shewana3_2714 0.64 -0.8 3,245,132 - Shewana3_2714 0.68 -0.6 3,245,174 - Shewana3_2714 0.72 -2.3 3,245,206 - Shewana3_2714 0.75 -0.9 3,245,367 - -0.6 3,245,569 - -0.6 3,245,574 - +1.0 3,245,592 - -0.9 3,245,647 - +0.0 3,245,732 - Shewana3_2715 0.11 -1.3 3,245,807 - Shewana3_2715 0.19 -1.6 3,245,895 + Shewana3_2715 0.27 -0.4 3,246,399 - Shewana3_2715 0.75 -0.6 3,246,628 - -2.0 3,246,804 + +1.8 3,246,810 - +0.2 3,246,818 + +1.3 3,247,047 - -0.1 3,247,331 - Shewana3_2716 0.30 -0.3 3,247,353 - Shewana3_2716 0.32 -0.6 3,247,360 + Shewana3_2716 0.32 -1.0 3,247,592 + Shewana3_2716 0.49 -1.0
Or see this region's nucleotide sequence