Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2710 and Shewana3_2711 are separated by 472 nucleotides Shewana3_2711 and Shewana3_2712 are separated by 26 nucleotides Shewana3_2712 and Shewana3_2713 are separated by 85 nucleotides
Shewana3_2710: Shewana3_2710 - integral membrane protein TerC (RefSeq), at 3,239,622 to 3,240,599
_2710
Shewana3_2711: Shewana3_2711 - hypothetical protein (RefSeq), at 3,241,072 to 3,241,356
_2711
Shewana3_2712: Shewana3_2712 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 3,241,383 to 3,242,567
_2712
Shewana3_2713: Shewana3_2713 - peptide synthase (RefSeq), at 3,242,653 to 3,244,479
_2713
Position (kb)
3241
3242
3243 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3240.505 kb on + strand at 3240.674 kb on + strand at 3240.733 kb on + strand at 3240.793 kb on + strand at 3240.881 kb on - strand at 3240.942 kb on + strand at 3240.942 kb on + strand at 3240.942 kb on + strand at 3240.950 kb on - strand at 3241.197 kb on + strand, within Shewana3_2711 at 3241.289 kb on + strand, within Shewana3_2711 at 3241.393 kb on + strand at 3241.424 kb on + strand at 3242.233 kb on - strand, within Shewana3_2712 at 3242.281 kb on + strand, within Shewana3_2712 at 3242.281 kb on + strand, within Shewana3_2712 at 3242.371 kb on + strand, within Shewana3_2712 at 3242.961 kb on + strand, within Shewana3_2713 at 3243.089 kb on - strand, within Shewana3_2713 at 3243.167 kb on - strand, within Shewana3_2713 at 3243.236 kb on + strand, within Shewana3_2713 at 3243.263 kb on - strand, within Shewana3_2713 at 3243.534 kb on - strand, within Shewana3_2713
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,240,505 + +1.3 3,240,674 + -1.4 3,240,733 + -0.4 3,240,793 + -1.5 3,240,881 - -0.5 3,240,942 + +0.8 3,240,942 + -0.1 3,240,942 + -1.2 3,240,950 - +0.7 3,241,197 + Shewana3_2711 0.44 +2.3 3,241,289 + Shewana3_2711 0.76 +1.8 3,241,393 + +0.0 3,241,424 + -0.6 3,242,233 - Shewana3_2712 0.72 -1.0 3,242,281 + Shewana3_2712 0.76 -0.6 3,242,281 + Shewana3_2712 0.76 +0.0 3,242,371 + Shewana3_2712 0.83 +2.3 3,242,961 + Shewana3_2713 0.17 +1.8 3,243,089 - Shewana3_2713 0.24 -1.2 3,243,167 - Shewana3_2713 0.28 -2.1 3,243,236 + Shewana3_2713 0.32 -0.7 3,243,263 - Shewana3_2713 0.33 -0.2 3,243,534 - Shewana3_2713 0.48 +1.8
Or see this region's nucleotide sequence