Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2705 and Shewana3_2706 are separated by 171 nucleotides Shewana3_2706 and Shewana3_2707 are separated by 152 nucleotides Shewana3_2707 and Shewana3_2708 are separated by 272 nucleotides
Shewana3_2705: Shewana3_2705 - transcription activator, effector binding (RefSeq), at 3,233,980 to 3,234,429
_2705
Shewana3_2706: Shewana3_2706 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,234,601 to 3,234,984
_2706
Shewana3_2707: Shewana3_2707 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq), at 3,235,137 to 3,236,858
_2707
Shewana3_2708: Shewana3_2708 - hypothetical protein (RefSeq), at 3,237,131 to 3,237,436
_2708
Position (kb)
3235
3236
3237 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7 at 3234.190 kb on - strand, within Shewana3_2705 at 3234.274 kb on - strand, within Shewana3_2705 at 3234.426 kb on + strand at 3234.765 kb on + strand, within Shewana3_2706 at 3234.853 kb on - strand, within Shewana3_2706 at 3235.068 kb on - strand at 3235.200 kb on - strand at 3235.410 kb on - strand, within Shewana3_2707 at 3235.548 kb on - strand, within Shewana3_2707 at 3235.635 kb on + strand, within Shewana3_2707 at 3235.658 kb on - strand, within Shewana3_2707 at 3235.703 kb on - strand, within Shewana3_2707 at 3235.812 kb on - strand, within Shewana3_2707 at 3235.868 kb on - strand, within Shewana3_2707 at 3235.907 kb on - strand, within Shewana3_2707 at 3235.954 kb on - strand, within Shewana3_2707 at 3236.077 kb on + strand, within Shewana3_2707 at 3236.179 kb on + strand, within Shewana3_2707 at 3236.264 kb on + strand, within Shewana3_2707 at 3236.504 kb on + strand, within Shewana3_2707 at 3236.504 kb on + strand, within Shewana3_2707 at 3236.580 kb on + strand, within Shewana3_2707 at 3236.620 kb on + strand, within Shewana3_2707 at 3236.686 kb on + strand at 3236.694 kb on - strand at 3236.981 kb on + strand at 3236.988 kb on - strand at 3237.025 kb on - strand at 3237.092 kb on - strand at 3237.116 kb on - strand at 3237.435 kb on - strand at 3237.463 kb on - strand at 3237.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,234,190 - Shewana3_2705 0.47 +0.3 3,234,274 - Shewana3_2705 0.65 -0.9 3,234,426 + +0.9 3,234,765 + Shewana3_2706 0.43 +1.4 3,234,853 - Shewana3_2706 0.66 -0.4 3,235,068 - +7.6 3,235,200 - +1.1 3,235,410 - Shewana3_2707 0.16 +0.8 3,235,548 - Shewana3_2707 0.24 +0.6 3,235,635 + Shewana3_2707 0.29 +1.0 3,235,658 - Shewana3_2707 0.30 +1.1 3,235,703 - Shewana3_2707 0.33 +1.5 3,235,812 - Shewana3_2707 0.39 +0.8 3,235,868 - Shewana3_2707 0.42 +0.7 3,235,907 - Shewana3_2707 0.45 +0.7 3,235,954 - Shewana3_2707 0.47 +1.4 3,236,077 + Shewana3_2707 0.55 +0.3 3,236,179 + Shewana3_2707 0.61 +0.0 3,236,264 + Shewana3_2707 0.65 +0.5 3,236,504 + Shewana3_2707 0.79 +1.3 3,236,504 + Shewana3_2707 0.79 +0.3 3,236,580 + Shewana3_2707 0.84 +3.3 3,236,620 + Shewana3_2707 0.86 +1.8 3,236,686 + +0.5 3,236,694 - +0.6 3,236,981 + +0.9 3,236,988 - -0.0 3,237,025 - +0.3 3,237,092 - +1.0 3,237,116 - -0.1 3,237,435 - +1.1 3,237,463 - -0.3 3,237,642 + -0.7
Or see this region's nucleotide sequence