Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2635

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2633 and Shewana3_2634 are separated by 5 nucleotidesShewana3_2634 and Shewana3_2635 are separated by 33 nucleotidesShewana3_2635 and Shewana3_2636 are separated by 846 nucleotides Shewana3_2633: Shewana3_2633 - hypothetical protein (RefSeq), at 3,142,399 to 3,143,091 _2633 Shewana3_2634: Shewana3_2634 - histone deacetylase superfamily protein (RefSeq), at 3,143,097 to 3,143,999 _2634 Shewana3_2635: Shewana3_2635 - hypothetical protein (RefSeq), at 3,144,033 to 3,144,320 _2635 Shewana3_2636: Shewana3_2636 - hypothetical protein (RefSeq), at 3,145,167 to 3,146,663 _2636 Position (kb) 3144 3145Strain fitness (log2 ratio) -1 0 1 2 3at 3143.098 kb on - strandat 3143.151 kb on - strandat 3143.330 kb on - strand, within Shewana3_2634at 3143.438 kb on - strand, within Shewana3_2634at 3143.596 kb on + strand, within Shewana3_2634at 3143.610 kb on + strand, within Shewana3_2634at 3143.938 kb on - strandat 3143.994 kb on - strandat 3144.134 kb on + strand, within Shewana3_2635at 3144.276 kb on - strand, within Shewana3_2635at 3144.310 kb on - strandat 3144.329 kb on + strandat 3144.360 kb on + strandat 3144.583 kb on - strandat 3144.661 kb on + strandat 3144.678 kb on - strandat 3144.911 kb on + strandat 3144.916 kb on + strandat 3144.924 kb on - strandat 3144.924 kb on - strandat 3144.928 kb on + strandat 3144.935 kb on + strandat 3144.958 kb on + strandat 3144.959 kb on - strandat 3144.966 kb on - strandat 3145.006 kb on + strandat 3145.013 kb on - strandat 3145.014 kb on - strandat 3145.025 kb on - strandat 3145.042 kb on + strandat 3145.048 kb on + strandat 3145.050 kb on - strandat 3145.050 kb on - strandat 3145.070 kb on - strandat 3145.160 kb on - strandat 3145.162 kb on + strandat 3145.162 kb on + strandat 3145.163 kb on - strandat 3145.170 kb on - strandat 3145.170 kb on - strandat 3145.170 kb on - strandat 3145.229 kb on - strandat 3145.229 kb on - strandat 3145.231 kb on + strandat 3145.231 kb on + strandat 3145.234 kb on - strandat 3145.234 kb on - strandat 3145.239 kb on - strandat 3145.239 kb on - strandat 3145.239 kb on - strandat 3145.239 kb on - strandat 3145.252 kb on + strandat 3145.260 kb on - strandat 3145.260 kb on - strandat 3145.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,143,098 - +1.3
3,143,151 - +0.6
3,143,330 - Shewana3_2634 0.26 +0.1
3,143,438 - Shewana3_2634 0.38 +0.4
3,143,596 + Shewana3_2634 0.55 +1.3
3,143,610 + Shewana3_2634 0.57 +0.5
3,143,938 - +1.0
3,143,994 - -0.4
3,144,134 + Shewana3_2635 0.35 -1.4
3,144,276 - Shewana3_2635 0.84 +1.7
3,144,310 - +0.7
3,144,329 + -1.1
3,144,360 + +2.3
3,144,583 - +2.3
3,144,661 + +0.9
3,144,678 - -0.4
3,144,911 + +1.0
3,144,916 + -0.3
3,144,924 - +0.5
3,144,924 - -1.5
3,144,928 + +1.3
3,144,935 + -0.9
3,144,958 + +0.5
3,144,959 - -0.9
3,144,966 - -0.9
3,145,006 + +1.3
3,145,013 - +3.3
3,145,014 - +1.0
3,145,025 - +1.0
3,145,042 + +0.7
3,145,048 + +0.1
3,145,050 - +0.4
3,145,050 - +1.1
3,145,070 - +2.3
3,145,160 - +0.8
3,145,162 + +2.8
3,145,162 + -0.7
3,145,163 - -0.8
3,145,170 - +2.0
3,145,170 - -0.5
3,145,170 - +2.1
3,145,229 - +0.2
3,145,229 - -0.5
3,145,231 + +1.0
3,145,231 + +1.0
3,145,234 - -1.1
3,145,234 - +0.7
3,145,239 - -0.1
3,145,239 - -0.1
3,145,239 - +1.0
3,145,239 - +2.7
3,145,252 + +0.5
3,145,260 - -0.5
3,145,260 - +1.8
3,145,291 - +0.9

Or see this region's nucleotide sequence