Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2588
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,092,891 | + | Shewana3_2587 | 0.29 | -1.2 | |
3,093,127 | + | Shewana3_2587 | 0.49 | -0.1 | |
3,093,227 | - | Shewana3_2587 | 0.58 | +0.7 | |
3,093,615 | + | -0.4 | |||
3,093,676 | + | +0.8 | |||
3,094,124 | - | Shewana3_2588 | 0.63 | -0.6 | |
3,094,300 | + | -0.2 | |||
3,094,323 | - | +1.7 | |||
3,094,497 | + | Shewana3_2589 | 0.24 | +1.7 | |
3,094,505 | - | Shewana3_2589 | 0.26 | -1.4 | |
3,094,530 | - | Shewana3_2589 | 0.35 | +2.3 | |
3,094,686 | - | Shewana3_2589 | 0.86 | +3.3 | |
3,094,686 | - | Shewana3_2589 | 0.86 | -2.3 | |
3,094,760 | + | +1.0 | |||
3,094,760 | + | +0.6 | |||
3,095,074 | + | Shewana3_2590 | 0.40 | +0.7 | |
3,095,077 | - | Shewana3_2590 | 0.41 | +1.0 | |
3,095,127 | + | Shewana3_2590 | 0.48 | -0.6 | |
3,095,203 | + | Shewana3_2590 | 0.59 | +0.1 | |
3,095,220 | + | Shewana3_2590 | 0.62 | +1.5 | |
3,095,220 | + | Shewana3_2590 | 0.62 | -0.0 | |
3,095,228 | - | Shewana3_2590 | 0.63 | +3.3 |
Or see this region's nucleotide sequence