Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2571 and sbcB are separated by 175 nucleotides sbcB and Shewana3_2573 are separated by 212 nucleotides
Shewana3_2571: Shewana3_2571 - hypothetical protein (RefSeq), at 3,075,072 to 3,075,878
_2571
Shewana3_2572: sbcB - exonuclease I (RefSeq), at 3,076,054 to 3,077,466
sbcB
Shewana3_2573: Shewana3_2573 - Cytidine deaminase (EC 3.5.4.5) (from data) , at 3,077,679 to 3,078,569
_2573
Position (kb)
3076
3077
3078 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3075.139 kb on - strand at 3075.262 kb on + strand, within Shewana3_2571 at 3075.591 kb on + strand, within Shewana3_2571 at 3075.810 kb on + strand at 3075.811 kb on + strand at 3075.811 kb on + strand at 3075.819 kb on - strand at 3075.819 kb on - strand at 3075.828 kb on + strand at 3075.841 kb on - strand at 3075.893 kb on + strand at 3076.122 kb on + strand at 3076.130 kb on - strand at 3076.164 kb on - strand at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.356 kb on - strand, within sbcB at 3076.511 kb on - strand, within sbcB at 3076.574 kb on + strand, within sbcB at 3076.598 kb on + strand, within sbcB at 3076.598 kb on + strand, within sbcB at 3076.690 kb on - strand, within sbcB at 3076.762 kb on + strand, within sbcB at 3076.762 kb on + strand, within sbcB at 3077.146 kb on - strand, within sbcB at 3077.701 kb on + strand at 3077.935 kb on + strand, within Shewana3_2573 at 3077.941 kb on + strand, within Shewana3_2573 at 3077.941 kb on + strand, within Shewana3_2573 at 3077.949 kb on - strand, within Shewana3_2573 at 3077.966 kb on + strand, within Shewana3_2573 at 3077.966 kb on + strand, within Shewana3_2573 at 3077.974 kb on - strand, within Shewana3_2573 at 3078.033 kb on + strand, within Shewana3_2573 at 3078.144 kb on - strand, within Shewana3_2573 at 3078.144 kb on - strand, within Shewana3_2573 at 3078.151 kb on + strand, within Shewana3_2573 at 3078.276 kb on + strand, within Shewana3_2573 at 3078.284 kb on - strand, within Shewana3_2573 at 3078.374 kb on + strand, within Shewana3_2573
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,075,139 - -1.4 3,075,262 + Shewana3_2571 0.24 +1.3 3,075,591 + Shewana3_2571 0.64 +0.5 3,075,810 + +1.7 3,075,811 + +2.3 3,075,811 + -1.6 3,075,819 - -1.1 3,075,819 - +1.0 3,075,828 + +1.7 3,075,841 - +0.1 3,075,893 + +1.3 3,076,122 + +2.3 3,076,130 - -0.0 3,076,164 - +1.3 3,076,348 + sbcB Shewana3_2572 0.21 -1.4 3,076,348 + sbcB Shewana3_2572 0.21 +1.7 3,076,348 + sbcB Shewana3_2572 0.21 -1.2 3,076,348 + sbcB Shewana3_2572 0.21 +1.0 3,076,356 - sbcB Shewana3_2572 0.21 -0.0 3,076,511 - sbcB Shewana3_2572 0.32 +1.7 3,076,574 + sbcB Shewana3_2572 0.37 +1.1 3,076,598 + sbcB Shewana3_2572 0.38 -1.6 3,076,598 + sbcB Shewana3_2572 0.38 -0.6 3,076,690 - sbcB Shewana3_2572 0.45 +0.1 3,076,762 + sbcB Shewana3_2572 0.50 +0.3 3,076,762 + sbcB Shewana3_2572 0.50 -0.3 3,077,146 - sbcB Shewana3_2572 0.77 +1.7 3,077,701 + -0.0 3,077,935 + Shewana3_2573 0.29 +0.3 3,077,941 + Shewana3_2573 0.29 +0.1 3,077,941 + Shewana3_2573 0.29 +0.6 3,077,949 - Shewana3_2573 0.30 -0.0 3,077,966 + Shewana3_2573 0.32 +1.1 3,077,966 + Shewana3_2573 0.32 +3.3 3,077,974 - Shewana3_2573 0.33 -1.0 3,078,033 + Shewana3_2573 0.40 +0.2 3,078,144 - Shewana3_2573 0.52 -1.2 3,078,144 - Shewana3_2573 0.52 -0.6 3,078,151 + Shewana3_2573 0.53 -0.7 3,078,276 + Shewana3_2573 0.67 +0.9 3,078,284 - Shewana3_2573 0.68 -0.5 3,078,374 + Shewana3_2573 0.78 +0.4
Or see this region's nucleotide sequence