Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2568

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2567 and Shewana3_2568 are separated by 145 nucleotidesShewana3_2568 and Shewana3_2569 are separated by 433 nucleotidesShewana3_2569 and rrmA are separated by 306 nucleotides Shewana3_2567: Shewana3_2567 - RNAse E (RefSeq), at 3,068,272 to 3,071,568 _2567 Shewana3_2568: Shewana3_2568 - sulphate transporter (RefSeq), at 3,071,714 to 3,073,273 _2568 Shewana3_2569: Shewana3_2569 - cold-shock DNA-binding protein family protein (RefSeq), at 3,073,707 to 3,073,916 _2569 Shewana3_2570: rrmA - 23S rRNA methyltransferase A (RefSeq), at 3,074,223 to 3,075,038 rrmA Position (kb) 3071 3072 3073 3074Strain fitness (log2 ratio) -1 0 1 2 3at 3070.827 kb on + strand, within Shewana3_2567at 3070.837 kb on + strand, within Shewana3_2567at 3071.082 kb on + strand, within Shewana3_2567at 3071.241 kb on + strandat 3071.435 kb on + strandat 3072.479 kb on + strand, within Shewana3_2568at 3072.740 kb on + strand, within Shewana3_2568at 3072.936 kb on + strand, within Shewana3_2568at 3073.081 kb on - strand, within Shewana3_2568at 3073.473 kb on + strandat 3073.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,070,827 + Shewana3_2567 0.77 +3.0
3,070,837 + Shewana3_2567 0.78 +0.8
3,071,082 + Shewana3_2567 0.85 +2.2
3,071,241 + +2.5
3,071,435 + +0.6
3,072,479 + Shewana3_2568 0.49 -1.7
3,072,740 + Shewana3_2568 0.66 -1.0
3,072,936 + Shewana3_2568 0.78 +2.3
3,073,081 - Shewana3_2568 0.88 +0.1
3,073,473 + +1.0
3,073,497 - +3.3

Or see this region's nucleotide sequence