Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2513

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2512 and Shewana3_2513 are separated by 287 nucleotidesShewana3_2513 and mdoG are separated by 417 nucleotides Shewana3_2512: Shewana3_2512 - heat shock protein HtpX (RefSeq), at 3,002,225 to 3,003,088 _2512 Shewana3_2513: Shewana3_2513 - peptidase E (RefSeq), at 3,003,376 to 3,004,086 _2513 Shewana3_2514: mdoG - glucan biosynthesis protein G (RefSeq), at 3,004,504 to 3,006,084 mdoG Position (kb) 3003 3004 3005Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3002.537 kb on - strand, within Shewana3_2512at 3002.876 kb on - strand, within Shewana3_2512at 3002.881 kb on - strand, within Shewana3_2512at 3002.889 kb on - strand, within Shewana3_2512at 3003.166 kb on + strandat 3003.208 kb on + strandat 3003.237 kb on + strandat 3003.391 kb on + strandat 3003.394 kb on + strandat 3003.402 kb on - strandat 3003.404 kb on + strandat 3003.404 kb on + strandat 3003.404 kb on + strandat 3003.416 kb on + strandat 3003.431 kb on - strandat 3003.960 kb on - strand, within Shewana3_2513at 3004.201 kb on - strandat 3004.592 kb on + strandat 3004.600 kb on - strandat 3004.600 kb on - strandat 3004.613 kb on + strandat 3004.680 kb on + strand, within mdoGat 3004.936 kb on - strand, within mdoGat 3004.998 kb on + strand, within mdoG

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,002,537 - Shewana3_2512 0.36 -0.3
3,002,876 - Shewana3_2512 0.75 +0.2
3,002,881 - Shewana3_2512 0.76 -1.1
3,002,889 - Shewana3_2512 0.77 +0.4
3,003,166 + +1.7
3,003,208 + -0.2
3,003,237 + -0.2
3,003,391 + +0.5
3,003,394 + +0.2
3,003,402 - +0.9
3,003,404 + +1.2
3,003,404 + -0.7
3,003,404 + -1.8
3,003,416 + +1.0
3,003,431 - -0.8
3,003,960 - Shewana3_2513 0.82 -1.1
3,004,201 - -0.6
3,004,592 + +1.2
3,004,600 - +2.2
3,004,600 - +3.2
3,004,613 + +2.2
3,004,680 + mdoG Shewana3_2514 0.11 +0.7
3,004,936 - mdoG Shewana3_2514 0.27 -0.1
3,004,998 + mdoG Shewana3_2514 0.31 +0.4

Or see this region's nucleotide sequence