Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2505

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2503 and Shewana3_2504 are separated by 362 nucleotidesShewana3_2504 and Shewana3_2505 are separated by 130 nucleotidesShewana3_2505 and Shewana3_2506 overlap by 14 nucleotidesShewana3_2506 and Shewana3_2507 overlap by 4 nucleotides Shewana3_2503: Shewana3_2503 - purine nucleoside phosphorylase (RefSeq), at 2,994,813 to 2,995,517 _2503 Shewana3_2504: Shewana3_2504 - hypothetical protein (RefSeq), at 2,995,880 to 2,996,272 _2504 Shewana3_2505: Shewana3_2505 - thioesterase superfamily protein (RefSeq), at 2,996,403 to 2,996,867 _2505 Shewana3_2506: Shewana3_2506 - hypothetical protein (RefSeq), at 2,996,854 to 2,997,381 _2506 Shewana3_2507: Shewana3_2507 - histidine triad (HIT) protein (RefSeq), at 2,997,378 to 2,997,734 _2507 Position (kb) 2996 2997Strain fitness (log2 ratio) -2 -1 0 1 2at 2995.504 kb on - strandat 2995.513 kb on + strandat 2995.521 kb on - strandat 2995.527 kb on - strandat 2995.632 kb on - strandat 2995.655 kb on - strandat 2995.683 kb on - strandat 2995.732 kb on - strandat 2995.871 kb on + strandat 2995.911 kb on - strandat 2996.354 kb on - strandat 2996.388 kb on + strandat 2996.798 kb on + strand, within Shewana3_2505at 2996.806 kb on - strand, within Shewana3_2505at 2996.953 kb on + strand, within Shewana3_2506at 2996.987 kb on - strand, within Shewana3_2506at 2996.992 kb on - strand, within Shewana3_2506at 2997.019 kb on - strand, within Shewana3_2506at 2997.052 kb on + strand, within Shewana3_2506at 2997.194 kb on - strand, within Shewana3_2506at 2997.569 kb on - strand, within Shewana3_2507at 2997.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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2,995,504 - +1.7
2,995,513 + -0.3
2,995,521 - +0.9
2,995,527 - -1.2
2,995,632 - -1.6
2,995,655 - -0.6
2,995,683 - +1.1
2,995,732 - +2.2
2,995,871 + +0.2
2,995,911 - -0.3
2,996,354 - -0.0
2,996,388 + -0.2
2,996,798 + Shewana3_2505 0.85 -1.3
2,996,806 - Shewana3_2505 0.87 -1.1
2,996,953 + Shewana3_2506 0.19 -0.9
2,996,987 - Shewana3_2506 0.25 +0.7
2,996,992 - Shewana3_2506 0.26 -0.5
2,997,019 - Shewana3_2506 0.31 +1.4
2,997,052 + Shewana3_2506 0.38 -1.8
2,997,194 - Shewana3_2506 0.64 -0.4
2,997,569 - Shewana3_2507 0.54 -0.0
2,997,848 + -0.1

Or see this region's nucleotide sequence