Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2496 and Shewana3_2497 are separated by 110 nucleotides Shewana3_2497 and Shewana3_2498 are separated by 90 nucleotides Shewana3_2498 and Shewana3_2499 are separated by 68 nucleotides
Shewana3_2496: Shewana3_2496 - hypothetical protein (RefSeq), at 2,986,731 to 2,987,603
_2496
Shewana3_2497: Shewana3_2497 - aminoglycoside phosphotransferase (RefSeq), at 2,987,714 to 2,989,018
_2497
Shewana3_2498: Shewana3_2498 - nicotinamide mononucleotide transporter PnuC (RefSeq), at 2,989,109 to 2,989,774
_2498
Shewana3_2499: Shewana3_2499 - hypothetical protein (RefSeq), at 2,989,843 to 2,990,103
_2499
Position (kb)
2987
2988
2989
2990 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2986.737 kb on - strand at 2986.936 kb on - strand, within Shewana3_2496 at 2986.947 kb on - strand, within Shewana3_2496 at 2986.973 kb on + strand, within Shewana3_2496 at 2986.988 kb on + strand, within Shewana3_2496 at 2986.988 kb on + strand, within Shewana3_2496 at 2986.988 kb on + strand, within Shewana3_2496 at 2986.996 kb on - strand, within Shewana3_2496 at 2987.042 kb on + strand, within Shewana3_2496 at 2987.521 kb on - strand at 2987.615 kb on + strand at 2987.760 kb on + strand at 2987.866 kb on + strand, within Shewana3_2497 at 2987.880 kb on - strand, within Shewana3_2497 at 2987.900 kb on + strand, within Shewana3_2497 at 2987.900 kb on - strand, within Shewana3_2497 at 2987.936 kb on - strand, within Shewana3_2497 at 2987.993 kb on + strand, within Shewana3_2497 at 2988.136 kb on - strand, within Shewana3_2497 at 2988.246 kb on - strand, within Shewana3_2497 at 2988.319 kb on - strand, within Shewana3_2497 at 2988.347 kb on - strand, within Shewana3_2497 at 2989.393 kb on - strand, within Shewana3_2498 at 2989.624 kb on - strand, within Shewana3_2498 at 2989.676 kb on + strand, within Shewana3_2498 at 2989.751 kb on - strand at 2989.776 kb on + strand at 2989.854 kb on + strand at 2989.930 kb on - strand, within Shewana3_2499 at 2989.942 kb on - strand, within Shewana3_2499
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,986,737 - -1.8 2,986,936 - Shewana3_2496 0.23 -0.9 2,986,947 - Shewana3_2496 0.25 +1.6 2,986,973 + Shewana3_2496 0.28 +1.2 2,986,988 + Shewana3_2496 0.29 +1.2 2,986,988 + Shewana3_2496 0.29 +0.4 2,986,988 + Shewana3_2496 0.29 +1.6 2,986,996 - Shewana3_2496 0.30 -0.1 2,987,042 + Shewana3_2496 0.36 +3.2 2,987,521 - +1.6 2,987,615 + +0.8 2,987,760 + +2.2 2,987,866 + Shewana3_2497 0.12 +2.2 2,987,880 - Shewana3_2497 0.13 -0.4 2,987,900 + Shewana3_2497 0.14 +0.6 2,987,900 - Shewana3_2497 0.14 +0.6 2,987,936 - Shewana3_2497 0.17 +0.1 2,987,993 + Shewana3_2497 0.21 -0.2 2,988,136 - Shewana3_2497 0.32 -0.4 2,988,246 - Shewana3_2497 0.41 -1.7 2,988,319 - Shewana3_2497 0.46 +0.1 2,988,347 - Shewana3_2497 0.49 -1.5 2,989,393 - Shewana3_2498 0.43 -0.6 2,989,624 - Shewana3_2498 0.77 -1.4 2,989,676 + Shewana3_2498 0.85 +3.2 2,989,751 - -0.4 2,989,776 + +0.7 2,989,854 + +0.4 2,989,930 - Shewana3_2499 0.33 +0.7 2,989,942 - Shewana3_2499 0.38 +0.7
Or see this region's nucleotide sequence