Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2484 and Shewana3_2485 are separated by 323 nucleotides Shewana3_2485 and Shewana3_2486 are separated by 112 nucleotides
Shewana3_2484: Shewana3_2484 - hexapaptide repeat-containing transferase (RefSeq), at 2,971,024 to 2,971,581
_2484
Shewana3_2485: Shewana3_2485 - lysine exporter protein LysE/YggA (RefSeq), at 2,971,905 to 2,972,528
_2485
Shewana3_2486: Shewana3_2486 - hypothetical protein (RefSeq), at 2,972,641 to 2,973,906
_2486
Position (kb)
2971
2972
2973 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2971.061 kb on - strand at 2971.272 kb on - strand, within Shewana3_2484 at 2971.323 kb on + strand, within Shewana3_2484 at 2971.407 kb on - strand, within Shewana3_2484 at 2971.409 kb on + strand, within Shewana3_2484 at 2971.758 kb on - strand at 2971.768 kb on + strand at 2971.787 kb on - strand at 2971.904 kb on - strand at 2971.904 kb on - strand at 2971.937 kb on - strand at 2971.973 kb on + strand, within Shewana3_2485 at 2972.025 kb on - strand, within Shewana3_2485 at 2972.103 kb on - strand, within Shewana3_2485 at 2972.113 kb on - strand, within Shewana3_2485 at 2972.113 kb on - strand, within Shewana3_2485 at 2972.282 kb on + strand, within Shewana3_2485 at 2972.282 kb on + strand, within Shewana3_2485 at 2972.290 kb on - strand, within Shewana3_2485 at 2972.781 kb on + strand, within Shewana3_2486 at 2973.101 kb on - strand, within Shewana3_2486 at 2973.143 kb on + strand, within Shewana3_2486 at 2973.182 kb on + strand, within Shewana3_2486 at 2973.182 kb on + strand, within Shewana3_2486 at 2973.190 kb on - strand, within Shewana3_2486 at 2973.196 kb on - strand, within Shewana3_2486 at 2973.215 kb on - strand, within Shewana3_2486 at 2973.235 kb on + strand, within Shewana3_2486 at 2973.236 kb on - strand, within Shewana3_2486 at 2973.305 kb on + strand, within Shewana3_2486
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,971,061 - -2.4 2,971,272 - Shewana3_2484 0.44 -0.6 2,971,323 + Shewana3_2484 0.54 +1.6 2,971,407 - Shewana3_2484 0.69 -0.3 2,971,409 + Shewana3_2484 0.69 +0.9 2,971,758 - +0.4 2,971,768 + +1.6 2,971,787 - +0.5 2,971,904 - +2.2 2,971,904 - -1.3 2,971,937 - +1.1 2,971,973 + Shewana3_2485 0.11 -2.0 2,972,025 - Shewana3_2485 0.19 +0.6 2,972,103 - Shewana3_2485 0.32 +0.7 2,972,113 - Shewana3_2485 0.33 +0.2 2,972,113 - Shewana3_2485 0.33 +0.5 2,972,282 + Shewana3_2485 0.60 +0.7 2,972,282 + Shewana3_2485 0.60 +0.4 2,972,290 - Shewana3_2485 0.62 +3.2 2,972,781 + Shewana3_2486 0.11 +2.2 2,973,101 - Shewana3_2486 0.36 +1.3 2,973,143 + Shewana3_2486 0.40 +0.2 2,973,182 + Shewana3_2486 0.43 +0.2 2,973,182 + Shewana3_2486 0.43 +0.1 2,973,190 - Shewana3_2486 0.43 +0.6 2,973,196 - Shewana3_2486 0.44 +0.1 2,973,215 - Shewana3_2486 0.45 -1.1 2,973,235 + Shewana3_2486 0.47 +0.8 2,973,236 - Shewana3_2486 0.47 -1.7 2,973,305 + Shewana3_2486 0.52 -0.9
Or see this region's nucleotide sequence