Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2482 and Shewana3_2483 are separated by 196 nucleotides Shewana3_2483 and Shewana3_2484 are separated by 183 nucleotides
Shewana3_2482: Shewana3_2482 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,968,200 to 2,969,240
_2482
Shewana3_2483: Shewana3_2483 - diguanylate cyclase (RefSeq), at 2,969,437 to 2,970,840
_2483
Shewana3_2484: Shewana3_2484 - hexapaptide repeat-containing transferase (RefSeq), at 2,971,024 to 2,971,581
_2484
Position (kb)
2969
2970
2971 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2968.482 kb on + strand, within Shewana3_2482 at 2968.526 kb on + strand, within Shewana3_2482 at 2968.534 kb on - strand, within Shewana3_2482 at 2968.548 kb on + strand, within Shewana3_2482 at 2968.800 kb on - strand, within Shewana3_2482 at 2968.802 kb on + strand, within Shewana3_2482 at 2968.842 kb on + strand, within Shewana3_2482 at 2968.859 kb on + strand, within Shewana3_2482 at 2969.055 kb on - strand, within Shewana3_2482 at 2969.644 kb on - strand, within Shewana3_2483 at 2969.682 kb on + strand, within Shewana3_2483 at 2969.746 kb on + strand, within Shewana3_2483 at 2969.846 kb on - strand, within Shewana3_2483 at 2969.929 kb on + strand, within Shewana3_2483 at 2969.958 kb on + strand, within Shewana3_2483 at 2969.966 kb on - strand, within Shewana3_2483 at 2970.007 kb on + strand, within Shewana3_2483 at 2970.067 kb on + strand, within Shewana3_2483 at 2970.094 kb on - strand, within Shewana3_2483 at 2970.115 kb on - strand, within Shewana3_2483 at 2970.146 kb on - strand, within Shewana3_2483 at 2970.276 kb on - strand, within Shewana3_2483 at 2970.286 kb on + strand, within Shewana3_2483 at 2970.381 kb on - strand, within Shewana3_2483 at 2970.490 kb on - strand, within Shewana3_2483 at 2970.653 kb on - strand, within Shewana3_2483 at 2970.779 kb on + strand at 2970.797 kb on - strand at 2970.852 kb on + strand at 2971.061 kb on - strand at 2971.272 kb on - strand, within Shewana3_2484 at 2971.323 kb on + strand, within Shewana3_2484 at 2971.407 kb on - strand, within Shewana3_2484 at 2971.409 kb on + strand, within Shewana3_2484 at 2971.758 kb on - strand at 2971.768 kb on + strand at 2971.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,968,482 + Shewana3_2482 0.27 -1.3 2,968,526 + Shewana3_2482 0.31 -1.9 2,968,534 - Shewana3_2482 0.32 -0.8 2,968,548 + Shewana3_2482 0.33 +0.7 2,968,800 - Shewana3_2482 0.58 -0.9 2,968,802 + Shewana3_2482 0.58 +0.6 2,968,842 + Shewana3_2482 0.62 +0.0 2,968,859 + Shewana3_2482 0.63 -0.6 2,969,055 - Shewana3_2482 0.82 +0.0 2,969,644 - Shewana3_2483 0.15 -0.6 2,969,682 + Shewana3_2483 0.17 +0.9 2,969,746 + Shewana3_2483 0.22 +2.2 2,969,846 - Shewana3_2483 0.29 -1.0 2,969,929 + Shewana3_2483 0.35 +1.4 2,969,958 + Shewana3_2483 0.37 -0.6 2,969,966 - Shewana3_2483 0.38 -1.4 2,970,007 + Shewana3_2483 0.41 +3.2 2,970,067 + Shewana3_2483 0.45 -0.3 2,970,094 - Shewana3_2483 0.47 -1.8 2,970,115 - Shewana3_2483 0.48 -1.8 2,970,146 - Shewana3_2483 0.50 -0.6 2,970,276 - Shewana3_2483 0.60 -0.1 2,970,286 + Shewana3_2483 0.60 +0.6 2,970,381 - Shewana3_2483 0.67 -1.0 2,970,490 - Shewana3_2483 0.75 -1.6 2,970,653 - Shewana3_2483 0.87 +0.6 2,970,779 + +0.9 2,970,797 - +1.2 2,970,852 + -0.3 2,971,061 - -2.4 2,971,272 - Shewana3_2484 0.44 -0.6 2,971,323 + Shewana3_2484 0.54 +1.6 2,971,407 - Shewana3_2484 0.69 -0.3 2,971,409 + Shewana3_2484 0.69 +0.9 2,971,758 - +0.4 2,971,768 + +1.6 2,971,787 - +0.5
Or see this region's nucleotide sequence