Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2460 and Shewana3_2461 are separated by 57 nucleotides Shewana3_2461 and Shewana3_2462 are separated by 179 nucleotides Shewana3_2462 and Shewana3_2463 are separated by 212 nucleotides Shewana3_2463 and Shewana3_2464 are separated by 96 nucleotides
Shewana3_2460: Shewana3_2460 - hypothetical protein (RefSeq), at 2,949,777 to 2,950,136
_2460
Shewana3_2461: Shewana3_2461 - hypothetical protein (RefSeq), at 2,950,194 to 2,950,835
_2461
Shewana3_2462: Shewana3_2462 - response regulator receiver modulated CheW protein (RefSeq), at 2,951,015 to 2,951,959
_2462
Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786
_2463
Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440
_2464
Position (kb)
2951
2952 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2950.015 kb on + strand, within Shewana3_2460 at 2950.078 kb on + strand, within Shewana3_2460 at 2950.120 kb on + strand at 2950.491 kb on + strand, within Shewana3_2461 at 2950.493 kb on + strand, within Shewana3_2461 at 2950.572 kb on - strand, within Shewana3_2461 at 2950.572 kb on - strand at 2950.974 kb on - strand at 2951.060 kb on - strand at 2951.211 kb on - strand, within Shewana3_2462 at 2951.596 kb on + strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.825 kb on + strand, within Shewana3_2462 at 2952.327 kb on - strand, within Shewana3_2463 at 2952.359 kb on + strand, within Shewana3_2463 at 2952.503 kb on - strand, within Shewana3_2463 at 2952.807 kb on + strand at 2952.822 kb on - strand at 2952.959 kb on + strand, within Shewana3_2464
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,950,015 + Shewana3_2460 0.66 +0.7 2,950,078 + Shewana3_2460 0.84 +0.5 2,950,120 + +0.9 2,950,491 + Shewana3_2461 0.46 -0.5 2,950,493 + Shewana3_2461 0.47 +1.4 2,950,572 - Shewana3_2461 0.59 +3.2 2,950,572 - +2.2 2,950,974 - -1.4 2,951,060 - +0.7 2,951,211 - Shewana3_2462 0.21 -0.0 2,951,596 + Shewana3_2462 0.61 +2.0 2,951,659 - Shewana3_2462 0.68 -1.2 2,951,659 - Shewana3_2462 0.68 -0.1 2,951,659 - Shewana3_2462 0.68 -0.2 2,951,825 + Shewana3_2462 0.86 +0.6 2,952,327 - Shewana3_2463 0.25 +1.2 2,952,359 + Shewana3_2463 0.30 +0.2 2,952,503 - Shewana3_2463 0.54 -0.3 2,952,807 + -2.0 2,952,822 - -0.7 2,952,959 + Shewana3_2464 0.14 +0.0
Or see this region's nucleotide sequence