Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2456
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,944,018 | - | Shewana3_2455 | 0.24 | +1.9 | |
2,944,192 | + | Shewana3_2455 | 0.50 | +0.2 | |
2,944,254 | + | Shewana3_2455 | 0.59 | +3.2 | |
2,944,262 | - | Shewana3_2455 | 0.61 | -0.4 | |
2,944,262 | - | Shewana3_2455 | 0.61 | -0.6 | |
2,944,265 | + | Shewana3_2455 | 0.61 | +3.2 | |
2,944,281 | - | Shewana3_2455 | 0.63 | +0.6 | |
2,944,398 | - | Shewana3_2455 | 0.81 | +0.4 | |
2,944,698 | - | Shewana3_2456 | 0.45 | +0.2 | |
2,944,711 | - | Shewana3_2456 | 0.50 | +0.2 | |
2,944,776 | + | Shewana3_2456 | 0.74 | +0.9 | |
2,944,910 | + | +1.6 | |||
2,944,910 | + | +1.2 | |||
2,944,918 | - | +1.8 | |||
2,944,918 | - | -0.2 | |||
2,944,918 | - | -0.7 | |||
2,944,995 | - | +0.8 | |||
2,945,212 | - | -0.4 | |||
2,945,235 | - | +1.6 | |||
2,945,273 | - | +2.5 | |||
2,945,573 | - | Shewana3_2457 | 0.20 | -0.4 | |
2,945,573 | - | Shewana3_2457 | 0.20 | -0.9 | |
2,945,611 | + | Shewana3_2457 | 0.22 | -0.3 | |
2,945,723 | - | Shewana3_2457 | 0.28 | +0.4 | |
2,945,807 | + | Shewana3_2457 | 0.32 | -0.1 | |
2,945,828 | - | Shewana3_2457 | 0.33 | -0.7 |
Or see this region's nucleotide sequence